SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7841

Length: 1879 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7841 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	33%
Blast2go	uncharacterized protein	-	-	2.26912e-30	43%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9T651

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 575 - 883

Fln protein: NDHGMKGGINSAAKISDSQSLDNTKGSFIYPSKSSGLHTSKATSFWGKSLQTASSLGMKSGKPVNSGESPQMSIPHGSQSLHSKQSTNSPWNRMAWAKVWGKGSGITPKDVSKPQVVAATNIGNMHGGSVEVGKPGMNGMGKNTGTTFPQQPVIVDPQIASKATNQTKSWQQLFSSTSGSSFAPSSPDTGIQLGCQHPAETGTRHAASEAHLLGSSPNSICFGSSAPVTLDTASSSSVFSNSVVVSVSAAESITFTWYLSTSR*SASCQLSYRKTDTFEDPSYVPDPVSLLGPVTESLDTFPLDLGTGLCSDTVRSGISSAAYGPISAPISKPASTECPLSELLPSAIVDEVHCAGDQHPSFKQLWDLPSLSLDGPNRASEQGQWQMWDTPQVGQCEIGVLGEPSNWILSNGNGISDQYNDQYKDLIRPLPPRTGRPLFKSEEHLPCVFSQQTTPIIPNQSVASVSTSNSLWLNQPAFEPVAASWDESCHHQSQPSFANGSMEEPETVAYASHSKQSPTTYWFKSLQEGNKVENNCSMERSGTSSWSTTANVLTRPHIGGIYTTPDVQSVWSYK*

Protein Length: 576

Fln nts: CAATGACCATGGCATGAAGGGAGGAATAAATAGTGCGGCGAAGATCAGTGACTCCCAATCTTTGGACAATACGAAAGGTTCATTTATTTATCCTTCTAAAAGTTCTGGACTACACACTAGTAAAGCGACTTCATTTTGGGGAAAGAGCCTCCAAACAGCCTCAAGTTTGGGGATGAAATCTGGCAAGCCAGTTAACTCTGGTGAATCTCCTCAGATGTCTATTCCTCATGGGTCACAAAGTCTACATTCCAAACAGAGCACCAATTCCCCGTGGAACAGAATGGCATGGGCAAAAGTTTGGGGTAAAGGCAGTGGCATTACTCCCAAGGATGTGTCCAAACCACAAGTTGTTGCTGCTACTAACATAGGGAACATGCATGGTGGCAGTGTAGAAGTGGGGAAACCTGGCATGAATGGCATGGGCAAGAACACAGGAACTACATTTCCACAACAACCTGTTATAGTTGATCCACAAATTGCATCAAAGGCAACGAATCAAACTAAATCATGGCAACAATTGTTTTCAAGCACGTCAGGTTCTTCCTTTGCACCATCTTCCCCAGATACTGGAATTCAACTGGGTTGTCAACATCCAGCTGAAACAGGAACCAGGCATGCTGCATCGGAAGCACATTTGTTGGGATCTTCTCCCAACAGTATTTGTTTTGGATCATCTGCACCAGTAACACTTGATACAGCCTCATCATCATCAGTATTTAGCAACTCAGTGGTGGTTTCAGTTTCTGCTGCTGAATCCATAACATTCACCTGGTACTTATCCACTTCCAGATAGTCTGCCTCTTGTCAACTCAGTTACAGGAAAACTGATACTTTTGAAGACCCGTCATATGTACCAGATCCAGTCTCCTTGCTAGGACCTGTTACAGAATCTCTTGACACTTTTCCTTTGGACCTTGGAACTGGGTTGTGTTCTGACACAGTAAGATCTGGTATTTCATCAGCTGCCTATGGCCCTATTTCTGCCCCAATCAGTAAACCTGCGTCTACCGAGTGTCCTTTGTCGGAACTCTTGCCTTCAGCAATTGTTGACGAAGTGCACTGTGCAGGAGACCAACATCCTTCGTTCAAACAACTGTGGGATTTGCCATCACTTTCACTGGATGGTCCAAATCGTGCATCTGAACAAGGACAGTGGCAGATGTGGGACACACCACAGGTGGGGCAGTGTGAGATTGGTGTTCTAGGGGAGCCATCTAATTGGATTTTATCTAATGGAAATGGCATTTCAGATCAGTACAATGATCAGTACAAAGACCTTATAAGGCCTCTTCCCCCAAGGACTGGGCGACCACTATTTAAGTCAGAAGAGCATCTTCCATGTGTTTTTTCTCAACAAACAACCCCTATAATTCCAAACCAAAGTGTGGCTTCAGTATCAACTAGTAATAGCTTGTGGCTGAACCAGCCAGCATTTGAACCTGTTGCAGCAAGCTGGGATGAATCTTGCCATCATCAGTCACAGCCTAGTTTTGCAAATGGTTCTATGGAAGAGCCAGAGACAGTGGCATATGCTTCTCATAGTAAACAATCTCCAACGACGTATTGGTTCAAGTCTCTGCAGGAAGGTAACAAGGTCGAAAATAACTGTTCCATGGAAAGAAGTGGAACTTCATCCTGGTCAACAACAGCAAATGTATTGACAAGACCTCATATTGGAGGCATTTATACTACCCCTGATGTACAGTCTGTCTGGTCATACAAATGA___TTTTGCTGTACCGCTGGACCATTTAATATTACTCATGCATTTATCATCTTGTCTTTTTTCATTTGCTGATGGTCTATTGCATTTATGAGTGATATTGTGTATGCATGTGTACATGTGCTTTTATTCTTTCCCTTTTTAGCCAGAGAGAGAGAG

Fln Alignment:

Contig7841___DTFEDPSYVPDPVSLLGPVTESLDTFPLDLGTGLCSDTVRSGISSAAYGPISAPISKPASTECPLSELLPSAIVDEVHCAGDQHPSFKQLWDLPSLSLDGPN-RASEQGQWQMWDTPQVGQCEIGVLGEPSNWILSNGNGISDQYNDQYKDLIRPLPPRTGRPLFKSEEHLPCVFSQQTTPIIPNQ------SVASVSTSNSLWLNQPAFEPVAASWDESCHHQSQPSFANGSMEEPETVAYASHS-KQSPTTYWFKSLQEGNKVENNCSMERSGTSSWSTTANVLTRPHIGGIYTTPDVQSVWSY
B9T651______________ELFEDPCYVPDPISLLGPVSESLADFQFDLGTGFTSDIGLERPHALKNLSTSPEVSKPSPIESPLSRL---RVADEKHNGSNWFPTTPKAQDSHNLPMDDVHVHANEKGTWQMWNSP-LGQDGLGLVGGPGSWLLPPER--TRLIND---DFLQPSPQKTMASLFAKDDQVLSGTHSPQKVFLGNGHSGGGFSPVTGSSDNDPWLQNAFFPPLSGSESHFSQKPQEESTRNELIYGSPTGAANNHTFEMSPANCWVK--KDWNVQD---SGEGIGKSSF-------TRPNTGGGYPTQDVQSFWSF

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
736			89	10	0.999919
986	78		21		1.0
989	78			21	1.0
995	21			78	1.0
997		21		78	1.0
998	78	14		7	0.999974
1000		14		64	1.0
1008			23	76	1.0
1026	77		22		0.999999
1027	33			66	1.0
1029	33			66	1.0
1032		33	66		1.0
1033	33			66	1.0
1035		66	33		1.0
1036	66		33		1.0
1040		33		66	1.0
1070		20		80	0.995493
1071	20		80		0.995493
1184	66	33			1.0
1185	33			66	1.0
1273			33	66	1.0
1372			25	75	0.996473
1373	25		75		0.996473
1374			25	75	0.996473
1377	25	75			0.996473
1383		25		75	0.996473
1384		25		75	0.996473
1385	25			75	0.996473
1388			16	83	0.994512
1390		16		83	0.994512
1391	16		83		0.994512
1392	83	16			0.994512
1393			16	83	0.994512
1394	16			83	0.994512
1412		20		80	0.995493
1416		20		80	0.995493
1452	16			83	0.994512
1454	16	83			0.994512
1792		33	66		0.997452
1794	66			33	0.997452
1795			66	33	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
1	12	CT CT CT CT CT CT	12
1168	1179	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain