SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7809

Length: 722 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7809

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_89.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SMT7_VITVI	-	-	7.00005e-41	53%
FL-Next	sp=Reticuline oxidase; Eschscholzia californica (California poppy).	-	-	0.0	40%
Blast2go	protein	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Oxygen oxidoreductase covalent FAD-binding site	IPR006093	-	-
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	Berberine/berberine-like	IPR012951	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
200		25		75	1.0
202			75	25	1.0
203	75	25			1.0
204	75		25		1.0
206	75		25		1.0
211			75	25	1.0
212	75			25	1.0
215	75		25		1.0
216	75	25			1.0
217		75		25	1.0
219	75			25	1.0
223	75			25	1.0
226	16	75		8	0.99999
253		16		83	0.999991
256			16	83	0.999991
260		83		16	0.999991
274			83	16	0.999991
292	83			16	0.999991
296			16	83	1.0
298		11		88	0.999937
299		11	88		0.999937
301		77	11	11	0.999842
303	88		11		0.999937
306	88		11		0.999937
310		11	88		0.999937
311	10	5	84		0.999846
313		10		89	0.999919
328	10			84	0.999846
333		10		89	0.999919
334	10	89			0.999919
343	11		88		0.999952
359		11	88		0.999937
361			88	11	0.999952
362	88	11			0.999952
365	12			87	0.999964
367	87	12			0.999964
369			86	13	0.999973
372		13	86		0.999973
439	6	68		25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain