SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7802

Length: 1650 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7802 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	triacylglycerol lipase 1 [Arabidopsis thaliana] sp\|Q71DJ5.1\|LIP1_ARATH RecName: Full=Triacylglycerol lipase 1; Flags: Precursor gb\|AAN77143.1\| putative triacylglycerol/steryl ester hydrolase [Arabidopsis thaliana] gb\|ABF58965.1\| At2g15230 [Arabidopsis tha	-	-	40%
FL-Next	sp=Triacylglycerol lipase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	40%
Blast2go	protein	-	-	61%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactolipase.	EC:3.1.1.26	-	0.0	61%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	61%
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	0.0	61%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycerolipid metabolism	00561		61%
Blast2go	Metabolic pathways	01100		61%
Blast2go	Lipoyl synthase.	EC:2.8.1.8	-	61%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lipoic acid metabolism	00785		0.0	61%
Blast2go	Metabolic pathways	01100		0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	lipoate biosynthetic process	GO:0009107	Biological Process	61%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	61%
Blast2go	circadian regulation of gene expression	GO:0032922	Biological Process	61%
Blast2go	galactolipase activity	GO:0047714	Molecular Function	61%
Blast2go	phospholipase activity	GO:0004620	Molecular Function	61%
Blast2go	GTPase activity	GO:0003924	Molecular Function	61%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	61%
Blast2go	lipoate synthase activity	GO:0016992	Molecular Function	61%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	61%
Blast2go	nucleus	GO:0005634	Cellular Component	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	Partial AB-hydrolase lipase domain	IPR006693	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q71DJ5

Fln msg:

Fln protein: MAGLGNLWVSLLFLSLCLALNWSVQSVQLGPKEAAHSVLNAHGICGTFVWSKGYNCAEFMVPTKDGFLLSVQRMSSPRFRTVDKEPTFLYHGIMQGGEAWVLNEPRESLAFIMADSGYDVWIGNTRTTMFSYGHTIYNRTQKEFWDWNADDLVAYDLPEMLEFVSDATGKQILYVGYSEGAMAGFAGFTNSEMANLVKKAGMLSPVAYLNHVTSPLIQAAAWLYIDRVVLSDGDYEFSLSGVQGSATIQSLCRRTRSNCMDLSSLVTGPSCCTNKSMTAYYNKYQQSTSTKNLAQMAQLLRSGRFGKYDYGLVGNLANYLTIIPPSYDLSAIPRHLPFFLAHGGRDMLADEEDVRHLAKLLPGYVEILKMPNYNHGDFVLGTSAHSDVYPHLLEFFREP*

Protein Length: 401

Fln nts: ATGGGGAGAGCCCAAACACAGTTTACTGCTAGGAATTTCCTGCCACACCTCTAGAGAAACCA_-_ATGGCGGGGCTCGGAAATTTGTGGGTTTCCCTTCTCTTTCTGTCACTATGTCTGGCGTTGAACTGGTCTGTGCAATCTGTGCAATTAGGTCCCAAGGAAGCAGCTCATTCGGTTTTGAATGCCCATGGAATATGTGGAACGTTCGTCTGGTCTAAAGGATATAACTGTGCAGAATTTATGGTCCCAACGAAGGATGGATTTCTACTGTCTGTGCAAAGGATGTCCAGTCCAAGATTTCGCACTGTCGATAAGGAACCCACTTTTCTTTATCACGGAATAATGCAGGGGGGTGAAGCATGGGTTCTGAACGAGCCTCGTGAGTCTCTGGCGTTCATCATGGCAGACTCTGGGTATGATGTTTGGATTGGAAACACGCGTACAACTATGTTCAGCTATGGACACACCATATACAATAGAACGCAGAAGGAATTCTGGGATTGGAATGCTGATGATCTCGTAGCCTATGATCTCCCAGAAATGCTGGAATTTGTCAGTGATGCCACCGGGAAACAAATTCTCTATGTTGGTTATTCTGAGGGCGCAATGGCAGGATTCGCCGGATTTACAAATAGTGAAATGGCAAACCTTGTGAAGAAGGCTGGCATGCTTAGTCCTGTCGCCTACTTAAACCATGTCACTTCTCCCTTGATCCAAGCTGCTGCCTGGCTATATATAGATCGGGTCGTATTGTCTGATGGTGATTACGAGTTCAGCCTCTCCGGTGTACAAGGCAGCGCTACTATTCAATCACTATGCAGGAGGACACGATCCAATTGCATGGACCTATCATCATTAGTTACAGGGCCGAGTTGCTGCACGAACAAGTCGATGACCGCATACTACAACAAATACCAGCAGTCCACATCCACGAAGAACCTTGCACAGATGGCTCAGTTGCTGCGCTCGGGCAGATTTGGAAAATACGACTACGGGTTAGTAGGAAATTTGGCGAATTATTTGACCATCATCCCTCCCTCTTACGATTTGTCTGCTATCCCAAGGCACTTACCATTTTTTCTAGCGCACGGAGGAAGGGATATGTTGGCAGACGAAGAGGACGTGAGGCATTTAGCAAAGCTGTTACCAGGATACGTTGAGATTTTGAAGATGCCAAACTATAACCATGGGGATTTCGTTCTCGGGACATCTGCACACAGTGATGTGTACCCTCATCTCCTGGAATTCTTCCGCGAACCCTGA___TAATCTCCCTTAAACTTGAAATTGGGTAGCAAATTATGAAATTCTAGAAGGTTAGAGAATTGTTTATCAGGAAGCTTGGGCAATGAGTATTGTTTTATCAGTTATTGCATGCTTTGTGGGATTACCATATTCATGCATATTTCAAAATTTTCATGTTCCTCTGCGGTACCTTAAATTATTATTAGGGGTTCCAGTTTCTAGTGGTTTACTGATGTTTCTGTTTTGAATAAATTATGAGTTTCAGATACGTGGCTTGCCCGTTGTTACATAGATACAGGAAAATTACTAATTCCTCATAAACAAAACTTTGAATACATCTATTATTAGATTCAACCTGATATTTATTGTTAGATTAACTATTAGATTGAATAAATTATGAGTTTCAGAT

Fln Alignment:

Contig7802___HGICGTFVWSKGYNCAEFMVPTKDGFLLSVQRMSSPRFRTVDKEPTFLYHGIMQGGEAWVLNEPRESLAFIMADSGYDVWIGNTRTTMFSYGHTIYNRTQKEFWDWNADDLVAYDLPEMLEFVSDATGKQILYVGYSEGAMAGFAGFTNSEMANLVKKAGMLSPVAYLNHVTSPLIQAAAWLYIDRVVLSDGDYEFSLSGVQGSATIQSLCRRTRSNCMDLSSLVTGPSCCTNKSMTAYYNKYQ-QSTSTKNLAQMAQLLRSGRFGKYDYGLVGNLANYLTIIPPSYDLSAIPRHLPFFLAHGGRDMLADEEDVRHLAKLLPGYVEILKMPNYNHGDFVLGTSAHSDVYPHLLEFFR
Q71DJ5______________NSLCADLIHPANYSCTEHSIQTKDGYILALQRVASLGPRLQSGPPVLLQHGLFMAGDVWFLNSPKESLGFILADHGFDVWVGNVRGTRYSYGHVTLSDTDKEFWDWSWQDLAMYDLAEMIQYLYSISNSKIFLVGHSQGTIMSFAALTQPHVAEMVEAAALLCPISYLDHVTAPLVERMVFMHLDQMVVALGLHQINFRSDMLVKLVDSLC-EGHMDCTDFLTSITGTNCCFNASKIEYYLDYEPHPSSVKNIRHLFQMIRKGTFAQYDYGYFKNLRTYGLSKPPEFILSHIPASLPMWMGYGGTDGLADVTDVEHTLAELPSSPELLYLEDYGHIDFVLGSSAKEDVYKHMIQFFR

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1533			83	16	0.999991
1545	40		60		1.0
1554	62		37		1.0
1558		14	85		0.993533
1610	83	16			0.994512
1611		16	83		0.994512
1612		16	83		0.994512
1613	66		33		1.0
1614	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain