SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7801

Length: 1628 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7801 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	D2/4-type cyclin (Fragment) n=1 Tax=Populus trichocarpa RepID=A8Y907_POPTR	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	d2 4-type cyclin	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin A/B/D/E	IPR014400	-	-
Sma3	Cyclin D	IPR015451	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Y7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 99 aas, putative chimeric sequence, your sequence is shorter than subject: 236 - 347

Fln protein: MAPSFDCVANAYIESCEDQEKLRQNAQILAQSGENDVDEPVSMLVQRETHYMLPEDYLQRLRNRTLDVNVRREAVGWILKVHSFYNFGPPTAYLAVNYLDRFLSRHRMPQGVKAWMIQLMAVACLSLAAKMEETQVPFPSDLQREDARFIFDARTIQRMELLILSTLQWGMRSITPFSFIDYFAYRAVQGHGHDATPPKAVMSRAIELILSTTEEIDFMEYRPSAIAAAALFFVV*

Protein Length: 237

Fln nts: CGTCGTGACCTTGGATGGCACTCATTTATCTGTGTCTGTCTGCCTGCCCTCTGGGCTTTTGGGATTCGGAGATGTGAAGAAAATGAGGTGGGAAGGGAGTAGATAACCAGAAGAAGATGAGCAAGATCTGGATTTGATACCAGCCAGCC_-_ATGGCGCCAAGCTTCGATTGTGTGGCCAATGCTTACATCGAATCCTGTGAAGACCAGGAGAAGCTCAGACAAAATGCCCAAATCTTGGCCCAATCTGGCGAGAACGATGTTGATGAACCAGTCTCCATGTTGGTACAAAGAGAGACCCATTACATGCTTCCAGAGGACTATTTGCAGAGGCTCCGGAATCGAACTCTCGACGTCAATGTTCGTCGAGAGGCCGTGGGCTGGATTCTGAAGGTGCATTCTTTCTACAATTTCGGGCCTCCAACGGCCTACCTGGCTGTCAATTACCTGGATCGATTTCTCTCGAGGCACAGAATGCCGCAAGGTGTGAAGGCTTGGATGATTCAGCTCATGGCCGTGGCCTGCTTGTCTCTCGCGGCTAAGATGGAGGAGACCCAGGTTCCATTCCCTTCGGACTTGCAGAGGGAGGACGCCAGATTCATCTTTGATGCTCGCACTATTCAAAGAATGGAGCTTCTGATCTTGAGTACATTGCAATGGGGAATGCGCTCCATCACGCCATTCTCATTTATCGATTACTTTGCTTACAGGGCTGTTCAAGGTCATGGCCATGATGCTACTCCTCCAAAAGCTGTGATGTCCAGAGCCATTGAACTCATTCTCAGTACCACAGAGGAAATAGATTTCATGGAGTATAGGCCATCGGCAATAGCTGCAGCAGCCCTGTTTTTTGTTGTCTAG___TCTGAAGAGGTGGTCGCCTCTGCTAAGCAGTCCATTACAAAAGGGCTTTGTCCTCCTCCATTACTGATGTTGATAAAGACAAAATGTTTGGATGTTACAATCTGATTCAAGAGACCATCATAGAAGGAGGCTGCTACTGGACTCCAATGTCCCTACAATCCACTGATAAAACTCCAGTGGGAGTGCTGGATGCAGCAGCCTGTTTAAGCAATACACCCACCTCAAGCTACAGCGTGAAGCCATATGCCTCTGTTACAGCAGCCAAGAGGAGAAAATTGAATGAAATCTGCAGTGCATTGTTGGTATCTCAAGCCCATCCCTGTTGACACAGTAGGAGGTCCCCAGCTTCGGTTGTCGAGATTGGAGAGTGGGATCTGGTAGGGTTTTAATGGAGCAGCAGATGCAAAACCCTATATAGATATATAATCGACTGTAAATGGGGTATAGAGTACTTGCTTAGCCTGCAAATTCCTGTCCCTTCCTCGCCTATTTGACCAACTGGTTTGGCCCAGACTGATTTTGTCTTGTTTTAGAGGAGGGTTTAACTCAGTTTGAATAATGGAGGATGATGATGACAAATTACCCATAATATCAGTGAAGAAACTCATACACTGGACAGGCCAACCTTCCAAATATGTGTTTAGAAAACCTTTCTCTTCTTTTTATGTCACACTCATCCAATCAAACAGGCCCACCTTTCCATATATCTCAGGTGGTTAGGTGAAACAATTGTTATCCTTCTTACCCAGGTTCACATCCCTGCTACCCCAT

Fln Alignment:

Contig7801___MAPSFDCVAN----------AYIESCEDQEKLRQNAQILAQSGE--------NDVDEPVSMLVQRETHYMLPEDYLQRLRNRTLDVNVRREAVGWILKVHSFYNFGPPTAYLAVNYLDRFLSRHRMPQGVKAWMIQLMAVACLSLAAKMEETQVPFPSDLQREDARFIFDARTIQRMELLILSTLQWGMRSITPFSFIDYFAYRAVQGHGHDATPPKAVMSRAIELILSTTEEIDFMEYRPS
D5A9Y7______________MAPSFDCVPNLLCAEDASVVAWDDDDDDMDENVNNESICLHSSDLEGFPDLPTEDDESISFLVEKECDHMPQDGYLQRFQSRTLDVSVRQDGLSWILKVHAYYNFGPLTAYLAINYLDRFLSSYQMPQG-KAWMLQLLSVSCLSLAAKMEETHVPLLLDLQIEDAKYVFEARTIERMELLILTTLKWRLRSITPFSFLHYFVHRA----AGDQSPPRALITRSIELIVATIRVIHLVGHRPS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1559		12	87		0.992554
1560	87	12			0.992554
1574	80	20			0.995493
1575		20	80		0.995493
1577			80	20	0.995493
1595	75	25			0.996473
1596		25	75		0.996473
1597	75	25			0.996473
1598		25		75	0.996473
1600	25			25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain