SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7792

Length: 1528 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7792 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	LysM domain-containing GPI-anchored protein 1 [Arabidopsis thaliana] sp\|Q93ZH0.1\|LYM1_ARATH RecName: Full=LysM domain-containing GPI-anchored protein 1; Flags: Precursor gb\|AAL09782.1\| At1g21880/T26F17_5 [Arabidopsis thaliana] gb\|AAU90072.1\| At1g21880 [Ar	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	lysm domain-containing gpi-anchored protein 1-like	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	71%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADU4

Fln msg: your sequence is longer than subject: 236 - 141

Fln protein: MSYAVRSGDSLASIAMSYGTTVTDLVDVNSLGSFQIAAGDIIAIPLAACSSDNLNLPSNSDLLVANGSYAVTADHCVQCSCGPNDLNLYCAPSLLARSCPGMRCKGSNLLIGDVIEQQTSAGCNVTSCLYGGYLNGKIHSSLTNFLQPQCLGKHVPPVYTRPPSTLPAPTPNGLSIPKSPSPATSPSPGTIAVANSNPAMEPSPNSCTSYKPLRSVSLLSMLVSGLPYLIYFCNR*

Protein Length: 237

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTTTTTCTTCTTGCTGCCATACCTTCCCTTCGATAGCTACTCACTACATTTTCAATCACACAATTACCCATAGTCTTCTTTGTTATTCCATAGAACAGCAGGCGGAAAACGAGAGGAATCCAGTTTCAAAAAAACAAGAAAAGCATTGCCCAATCCCCATTTCAATGCTCTCACCAGTATCAGCAGCAATGGAGTTTTTGTGGTGCAAATCCTTTTGTTGCTCTTACTATCATCGAGAGCCCTATCGAAATCCACAATCGAACCATGCAATGGATCAGATACCTGCGATTCCCTTGTGGCTTACTTGCTTCGAACTGATTTGAAGGTCTCAGAGGTGGCTACTCGTTTTCAAGTAGATCCTTTATCGATACTAGGTGCCAATGGATTCGATCCTCTAACCTCTGATTCTCAAACCCAAATCCTTCCCGCCGGTTCTTTCTTAAAGGTACCCATTAAATGCCAATGTGTCAACGGAATCCGGAAGTCTATGTCCACTGTGTACACTGTCCAACCCATTGATACTCTGCGCGGCATTGCGGATTCGGTGTTTGGGGGCTTGGTCACATGGGACCAGATTGAGGCCGTCGTGACCTTGGCTGTCACTCAGTTTTAAATATTGGGCAGTCCCTTGTAATCCCTCTTCCCTGTTTCTGTTTCAATGGCACAGACAATGGTTTTCCCGCTGTGTAT_-_ATGTCGTATGCTGTACGGTCCGGGGATAGTTTGGCCAGCATTGCGATGTCATATGGCACAACTGTTACAGATCTCGTGGATGTGAATTCCTTGGGAAGCTTCCAGATTGCAGCAGGAGACATTATTGCAATACCACTGGCAGCCTGCTCATCAGACAATTTGAATTTGCCTTCAAATAGTGATCTACTTGTAGCAAATGGAAGCTATGCTGTTACTGCTGATCATTGTGTGCAATGCAGCTGTGGGCCAAATGACTTGAACCTATATTGTGCACCATCCCTTCTGGCAAGATCATGCCCTGGCATGCGATGCAAGGGCAGTAACCTTTTGATTGGGGATGTCATTGAACAACAAACAAGTGCCGGTTGCAATGTTACTTCTTGCTTATATGGTGGCTATCTTAATGGCAAAATCCATTCATCTTTGACAAATTTCCTTCAACCTCAATGTTTAGGTAAACATGTCCCGCCTGTTTACACAAGGCCACCTTCTACCTTGCCAGCACCGACTCCAAATGGTTTGTCGATACCAAAATCTCCATCGCCGGCCACGTCTCCATCACCTGGTACAATAGCAGTAGCCAATTCTAATCCTGCAATGGAGCCAAGTCCTAATAGTTGTACTTCTTACAAGCCTCTGAGATCAGTCTCCCTTTTGAGCATGTTGGTTTCAGGGCTACCTTATCTTATATATTTTTGTAATAGGTAG___TCAATAGAGTTTGGATGTTTAAACTTGGCTGTTAAAAATCATAGGACAGCCATGTATTGATTTTTTACAATAAAGCTTAGCTTTGATGAAATGAAGCTGTTCC

Fln Alignment:

Contig7792___MRCKGSNLLIGDVIEQQTSAGCNVTSCLYGGYLNGKIHSSLTNFLQPQCLGKHVPPVYTRPPST
D5ADU4______________MQCKKSNFMIGNTTIQPTSGGCNVTTCSYSGFLNGTILTSLVTSLQPQCPGIQVMPNFTGPPST

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
566	33		66		0.997452
567		66	33		0.997452
568		66		33	0.997452
569		66	33		0.997452
580	33			66	0.997452
582		66	33		0.997452
583	66			33	0.997452
587	66		33		0.997452
589		33		66	0.997452
1002		33		66	0.997452
1004	33			66	0.997452
1033	33		66		0.997452
1078	33		66		0.997452
1217		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain