SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7755

Length: 1291 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7755

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mate efflux domain-containing protein [Arabidopsis thaliana] dbj\|BAB10542.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK76728.1\| unknown protein [Arabidopsis thaliana] gb\|AAL85047.1\| unknown protein [Arabidopsis thaliana] gb\|AED96215.1\| mate eff	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	mate efflux family protein dtx1-like	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	79%
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	79%
Blast2go	drug transmembrane transporter activity	GO:0015238	Molecular Function	79%
Blast2go	antiporter activity	GO:0015297	Molecular Function	79%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	0.0	-
Sma3		IPR015521	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADQ8

Fln msg: your sequence is shorter than subject: 259 - 517

Fln protein: RRDLGCHSIFSPACQKTRTSFSREALSDINSFLKLAIPSAVMVCLEYWSFEMLILLSGLLPKPQLEMSVLSICLSTASLAYMIPFGLGAAVSTRVSNELGAGHPRAAQFSVHVALYMSAMEALVIGTTLFSIRDVWGYAYSNEGEVVDYVSSMMPLLACSTILDGIQGVLSGIARGCGWQKLGAYANLGAYYVVGIPMAVTLAFLRPSWWQGTLDWNSLWALCTSNSTVHNNVVYGLGKAGKRGKRKSICIIIAHCYW*

Protein Length: 260

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTTTCCCCTGCATGTCAGAAGACACGGACATCCTTCTCAAGGGAAGCTTTATCTGATATCAATAGCTTTCTCAAGCTTGCTATTCCGTCTGCAGTGATGGTCTGCTTGGAGTACTGGTCTTTTGAAATGCTTATTCTCCTCTCCGGTTTGTTGCCTAAACCACAGCTTGAGATGTCAGTTCTCTCCATCTGCCTCAGCACTGCTTCACTTGCATATATGATTCCCTTTGGTCTGGGTGCTGCTGTGAGTACACGAGTTTCCAATGAACTAGGAGCTGGACACCCACGTGCTGCACAGTTCTCAGTGCATGTTGCGCTTTATATGTCGGCCATGGAGGCCCTCGTGATAGGAACTACTTTATTCTCTATTCGAGATGTCTGGGGCTATGCTTATAGCAACGAAGGAGAGGTAGTTGACTATGTTTCAAGCATGATGCCGCTACTTGCATGCTCAACCATTTTGGATGGCATCCAAGGTGTTCTATCAGGTATTGCTAGAGGATGTGGATGGCAAAAGTTAGGTGCCTATGCAAATCTTGGGGCATACTATGTGGTTGGAATTCCAATGGCGGTAACTTTGGCCTTTCTTCGTCCATCTTGGTGGCAGGGGACTTTGGATTGGAATTCTTTGTGGGCTTTGTGCACAAGCAATTCTACTGTTCATAATAACGTTGTGTACGGATTGGGGAAAGCAGGCAAAAGAGGCAAGAGAAAGAGTATATGCATCATTATTGCCCACTGTTACTGGTAA___TATAATAAAGGACGAGCAATAAGGTTTTCAGCCTGGATCGTTGGAGTCAATTTTCAATCTCTCATAACAAAAGGGGAAATCACTCAGGGCTTTCACATATGCTAAAATGTGCCTTGCCTGTTTCACCTCTGCAAAAGAAAAGGCTTCTGTGAATGTTTTATTCAACCAGATATCACGGTGGATGAAAGCAAAATCCCGTTGTTAAATGGAGATAAATTTAGGAGATTGGCATCCTTGCAAATAGAGTAGAAAATCCTTTTGTGGATGGATAAGGAGAATGATTCTTTGATTCACTCCTCACACCCTCCTATATTTATATGCCCTTGTTACTCACAGTCCTTACAAAGAATGATATATATTTTTTCTATGGAAACAGAAACATTTTGAAGTATGATATAATGCTGTGGGGTTCCTGAAATGGAAACCTTTTGAAGCACAATGTAAGTTTCTCCAATGAAACCTTTTGAAGCACAATGTAAGTTTCTCCAATAAATATATTAATGTTTCCTGGACC

Fln Alignment:

Contig7755___SPACQKTRTSFSREALSDINSFLKLAIPSAVMVCLEYWSFEMLILLSGLLPKPQLEMSVLSICLSTASLAYMIPFGLGAAVSTRVSNELGAGHPRAAQFSVHVALYMSAMEALVIGTTLFSIRDVWGYAYSNEGEVVDYVSSMMPLLACSTILDGIQGVLSGIARGCGWQKLGAYANLGAYYVVGIPMAVTLAF
D5ADQ8______________SPRCKYTWTGFSLQAFHGLPSFLKLSAASAVMLCLETWYFQILVLLAGLLDNPEIALDSLSICMSVLGWLFMISVGFNAAASVRVSNELGAGNPRAASFSVKIVTLMSFIISVIFGIVIILLRNVMSYAFTEGTEVADAVAELSPFLAFSIILNGVQPVLSGVAVGCGWQALVAYINVGCYYVIGIPLGCLLGF

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
657			25	75	0.996473
659		25		75	0.996473
663	25		75		0.996473
664		25	75		0.996473
668			25	75	0.996473
673	75			25	0.996473
676	75	25			0.996473
677			75	25	0.996473
810	80	20			0.995493
812		80		20	0.995493
814			20	80	0.995493
815			80	20	0.995493
820		20	80		0.995493
825	80	20			0.995493
830	80	20			0.995493
837	87	12			0.992554
838	87		12		0.992554
842	12	87			0.992554
843		14		85	0.993533
845	83			16	0.994512
847	83		16		0.994512
848	83		16		0.994512
850	83			16	0.994512
852	83	16			0.994512
854		20	80		0.995493
855			80	20	0.995493
856		20	80		0.995493
857	20		80		0.995493
1061	27		72		1.0
1173		14		85	0.993533
1241		66		33	1.0
1242	33	66			1.0
1244	33			66	1.0
1246	33			66	1.0
1247	33		66		1.0
1249	66			33	1.0
1251		66		33	1.0
1252	66			33	1.0
1253		66		33	1.0
1254	66	33			1.0
1255	66	33			1.0
1258			40	60	1.0
1260	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain