SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7729

Length: 1593 nt

Origin of reads: Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7729

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam08839, CDT1, DNA replication factor CDT1 like	-	-	5.0e-29	31%
FL-Next	sp=CDT1-like protein a, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	33%
Blast2go	cdt1-like protein chloroplastic-like	-	-	0.0	53%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	53%
Blast2go	protein binding	GO:0005515	Molecular Function	53%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	53%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9SJW9

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 530 - 571

Fln protein: S*PWLSLIAMSIKEVVNQAKQQLLSSSDSTAQPHTIQLSESISIHPKAPSPTNINLPEKYAMLAEFFDSMEAAIRLLRLRKTISSFRNICPQVETMTHKRFMYSHVAQMKHIFPEGLLLEKTMVHDEKTLCMKPDLKITLLHDALLSGKDKASNGNNTLGLRKAFYTSLVAFVKAYPKGDDVPEAILPEPFNRKCQLTTPAVTQLPSLICNSLTPARVAASILPENHQQESQPSMMSSLLSKSFQRHFSQRTLTPQPSVDSSFPVPKQDPIPKPNSEVLEIVKTNGGPESSPSPFPTQDPIQKPPSQVPETLKSYGAGGGHPSSCHSHFSPGFKSRFAASFCPPSKTQDIKESNEIECKLSTCNKTNLASPISKSCSTPQMSHSHETPSRIPNPVVVAEGTVDVDTPCKAVLVSENASSRMTKGCFSPVTPGFTPHSIQLKKASDVSSADKTPVVKSIPKSNIKSPMSKKSLRFGTVSVAPNTSSPIRSPGTPDFASPESSRLSQSSVKKSKNSNVKRSIAFNRQLEDSS

Protein Length: 531

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGCTATGTCTATCAAGGAGGTCGTCAACCAAGCAAAACAACAATTGCTGAGCTCAAGCGATTCCACAGCTCAACCCCACACAATTCAGCTATCCGAGTCCATTTCTATTCACCCAAAGGCTCCAAGCCCTACAAATATCAACCTCCCAGAAAAGTATGCAATGCTCGCAGAGTTTTTTGATTCCATGGAAGCTGCCATCAGATTGCTTCGGCTCCGCAAGACAATCAGTAGCTTCCGTAACATCTGTCCCCAAGTCGAAACAATGACCCACAAGAGATTTATGTATAGTCATGTGGCACAAATGAAGCACATTTTCCCCGAAGGATTGCTGTTGGAGAAGACCATGGTACATGACGAGAAGACATTGTGCATGAAGCCAGACTTGAAAATCACTCTCTTGCATGATGCACTGCTAAGTGGCAAGGACAAGGCCTCCAATGGCAACAACACATTGGGTTTGCGAAAAGCATTCTACACCAGCCTAGTGGCATTTGTCAAGGCTTATCCCAAGGGAGATGATGTTCCAGAGGCAATCCTACCAGAGCCATTCAATAGAAAATGTCAGCTAACGACCCCAGCTGTCACTCAACTTCCTTCTTTGATATGTAACAGCCTCACCCCAGCAAGAGTTGCTGCTTCTATTCTGCCTGAGAATCATCAACAAGAATCCCAACCCTCTATGATGTCTTCACTATTATCCAAAAGTTTCCAGAGGCATTTTTCTCAGAGAACCCTCACACCCCAACCATCTGTGGATTCATCATTCCCTGTGCCCAAGCAAGATCCAATTCCGAAGCCTAATTCCGAGGTCCTTGAAATAGTGAAAACAAATGGTGGTCCTGAGTCTTCGCCATCTCCTTTTCCCACGCAAGACCCAATTCAGAAGCCTCCTTCCCAGGTCCCTGAAACATTGAAATCATATGGTGCTGGTGGGGGTCATCCCTCATCTTGCCACTCTCATTTTTCTCCAGGATTTAAGAGCCGGTTTGCTGCCAGTTTCTGCCCCCCGTCAAAAACTCAAGACATTAAAGAATCTAATGAAATAGAATGTAAATTATCTACTTGTAATAAAACCAATCTAGCGTCCCCCATCTCAAAGTCTTGCAGCACTCCCCAAATGTCGCATTCTCACGAGACCCCTTCTAGGATCCCTAACCCAGTCGTTGTAGCCGAAGGTACTGTTGATGTAGACACACCTTGCAAAGCAGTACTAGTGTCGGAGAATGCAAGCTCCCGTATGACAAAGGGTTGCTTTTCCCCAGTAACACCAGGGTTTACCCCTCATTCTATTCAATTGAAAAAAGCTTCTGATGTTTCCTCTGCTGACAAAACTCCAGTTGTTAAATCCATACCGAAATCTAACATTAAGAGCCCCATGAGTAAGAAATCTCTGCGATTTGGCACTGTTTCAGTTGCACCTAATACATCCTCTCCTATCCGGTCTCCCGGGACACCAGACTTTGCTTCTCCAGAGTCTTCTCGTCTTTCTCAGTCATCTGTGAAGAAATCAAAAAATTCTAATGTCAAAAGATCAATAGCTTTTAACAGACAATTGGAAGACTCCTCTA

Fln Alignment:

Contig7729___IAMSIKEVVNQAKQQLLSSSDSTAQPHTIQLSESISIHPKAPSPTNIN-----LPEKYAMLAEFFDSMEAAIRLLRLRKTISSFRNICPQVETMTHKRFMYSHVAQMKHIFPEGLLLEKTMVHDEKTLCMKPDLKITLLHDALLSGKDKASNGNNTLGLRKAFYTSLVAFVKAYPKGDDVPEAILPEPFNRK--CQLTTPAVTQLPSLI--CNSLTPARVAASILPENHQQESQPSMMSSLLSKSFQRHFSQRTLTPQPSVDSSFPVPKQDPIPKPNSEVLEIVKTNGGPESSPSPFPTQDPI
Q9SJW9______________VALSVKEIRQAAGSRRRSEDPVASSAKSRLFFDSSSSSPSKRKSSNKNAEKEKLPEKYENLGKFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILPEAIEIKRVLIHDETTCCMKPDLHVTLNADA-VEYNDKSKSESKKIALRKVFRARLADFVKAHPQGDEVPEEPLPEPFNRRKPVENSNVEVKRVSSLMEEMASIPASKLFSSPI------TSTPVKTTSSLAKPTS---SQINIAPTPTKPTSTPA-------KQTLSEINILPTPVKPVSTLAKFPSTPAI

SNPs (tot: 98)

Position	A %	C %	G %	T %	Probability
68	66		33		0.997452
71		33		66	0.997452
77		33	66		0.997452
80		75		25	0.996473
81	50		50		1.0
82	50			25	0.995533
84	25	75			0.996473
85		25	50	25	0.995533
86	50	25	25		0.995533
88		25		75	0.996473
89	25	50	25		0.995533
91	50			50	1.0
145	25		75		0.996473
223		90		10	0.90298
225	90		10		0.90298
227		90	10		0.90298
229		10	90		0.90298
230	90	10			0.90298
235			13	86	0.999973
240	13	86			0.999973
242	6	81		12	0.999943
243		81	12	6	0.999943
246	81		6	12	0.999943
247	81		6		0.999943
249	87			12	0.999964
252	87	12			0.999964
315	84	15			1.0
319	84		15		1.0
322	15			84	1.0
323		15	84		1.0
326	84			15	1.0
327		84		15	1.0
328	84		15		1.0
329	84		15		1.0
330	84	15			1.0
333	84			15	1.0
334	84	15			1.0
335	15		84		1.0
337	84			15	1.0
507	87	12			0.992554
594		83		16	0.994512
595			16	83	0.994512
597	80	20			0.995493
601		75	25		0.996473
602		75	25		0.996473
604		50		50	1.0
681	71	28			1.0
682	75		12	12	0.975346
684		87	12		0.992554
685	75		25		1.0
686		12		87	0.992554
687		75	12	12	0.975346
688	87		12		0.992554
689	75	12		12	0.975346
691	85			14	0.993533
692	71	14		14	0.984337
693			85	14	0.993533
694	71	14	14		0.984337
695	85	14			0.993533
697		85	14		0.993533
698		85		14	0.993533
701	85	14			0.993533
702		85		14	0.993533
724		20		80	1.0
725	80		20		1.0
728		80	20		1.0
729	80			20	1.0
730	80		20		1.0
732	80	20			1.0
733		20	80		1.0
736			20	80	1.0
737		80	20		1.0
739	80			20	1.0
744		20	80		1.0
745			80	20	1.0
1125	66		33		1.0
1127		83	16		0.994512
1128	16		16	66	0.988813
1129		83		16	0.994512
1130	66	16	16		0.988813
1131	83			16	0.994512
1132	66	16		16	0.988813
1133		16	83		0.994512
1134			16	83	0.994512
1137			33	66	1.0
1138			83	16	0.994512
1140	85			14	0.993533
1141		14	85		0.993533
1238	90	10			0.90298
1240		90		10	0.90298
1241	90	10			0.90298
1247	90	10			0.90298
1248			90	10	0.90298
1251			10	90	0.90298
1253			90	10	0.90298
1255	90			10	0.90298
1256		10	90		0.90298
1258	90	10			0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain