SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7676

Length: 2619 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene7676
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAATGAAGGTGAAGAAGAGGAGGATGAGCAACATGAAGTTGTGAAGGAAAGACGCAAGCGAAAGGAATTTGAAGTATTTGTTGGTGGCCTTGACAAGGACGCTGCTGAAGAAGATCTGAGAAAAGTATTTAGTGAAGTTGGCGAAGTGGTTGAAATCCGACTTATGATGAATCCACAAACACAGAAAAACAAGGGATTTGCCTTTATACGTTATGCAAGTGTTGATCAAGCTAAGCGAGCTTGCACAGAACTCAAGAATCCACAGGTTAAGGGTAAAGTTTGTGGGGTTTCACCTAGCCAGGACAGTGACACACTTTTCTTGGGAAATATATGTAAGACATGGACTAAGGAAGCTCTAAGAGAGAAGTTGAAGAGCTTTGGCATTGATAATATTGAGGATTTAACTCTAGTTGAAGACCCTAAAGATGATGGAATGAATCGTGGCTTTGCCTTTCTAGAGTTCTCAGCTCGTTCAGATGCCATGAATGCATATAAACGGCTGCAGAAGAGAGATGTTGTTTTGGGTACTGATAAAACTGCAAAGGTGTCGTTTGCAGAGACATTTGTCGAGCCTGATGAAGAAGTTATGGCACAGGTTAAGACTGTATTTGTTGATGGGTTACCACCTTCCTGGGATGAGGATCGAATCAAAGAGCAATTTAAGAAATACGGTGATATCGAGAAAATTCAGTTGGCACGCAACATGCCTTCAGCTAGGCGGAGGGACTTTGGATTTGTTACTTTTTCAACCCATGATGCTGCAGTAGCATGTATAGATGGAGTTAATAACAATGGGCTTGGAGAAGGTGATAGTAAGGTGAAGGTGAAGGCTAGATTGTCAAAGCCTCATCAAAAAGGAAGATTATTAAAACACGGTGTTCGAGGTGGTTATAAGATTGGGCGTGGTCGTGGCAGTACACGTGGTGGCAGGGGCCCATGGGTTCGTGCTCCTGCCCATTTTGAGCCCCGGAGGTTTGGAGGTCGTGGTGGCCGTTTCATTGGACGAGGAGGTCAAGTTGCAGGTCGTGGAGTAAAGCGTCCTCTGGGGCGCAATGCATATCCACCTGTACCAGAGAGACTCCCAAGTAGGCATTTGCCACCCTATGAAAGGGTACGAGATAGGCGCCCGCCAGCTCCGGCATATCCAAGAGGTAATGCAAGGAGGGATTATGGAAGACGAGACGAACCTTATGATGATCGTCAAGTGCGACCTAGTCGATCAGCTTCTGATTTTGCTACTCGTGCTGCTGCGGGAAGGCGGTCATCCTATAGAGATAGTTATGCAAATCGTGGGCCTAGCAGCTATTCAGACAGTGCACCTCCTCGAGGGGTGGAAAGGACTGCATCACGTAGACCTGCCTATCCAGAAGAAAGCTATGGTCGACGCATGGATAAGCCTTATCGTGATAGCCGTGGTCGTGATTATGACAATGTTTCTGGATCAAAACGTCCATATTCAGCAGTGGAAGAACCATCTAGATATGGAGAACCTCCTATGAGAAACTCGAGGGCTCGTTTGGAATATGGTGTCAGTGCTAGTGCATCGCAGTATGGTGACTATGGTGATTCCACTAGACTTGGGAGAGGCTCCCAGCTAGGCTATGGGGGTAGTGCTAGACAGGATTCATATGGCTTATATGATGGACACCAATCTAGTGTGGGTTATGGAGGAAGTAAAACGTACGGTTCTCTTGGGGGCAGTGATGCTGGTGGAACATATTCCAGCTATGGCAATGATTACTTGTCCGGTGGAACTGATATTGGTAGCGGTTCATATTCATCTCTATATTCAAGCCGTAATATGGGAGGTGGATACTTATCCGGCAGTGGTTCAGGATCTTATTATTAAATTATCTGTGTTCACGAGGATGTTGTAGTCTAGTTTCTACCAATCAATACCAAGTCTTCAGCTATTATTACTAAAGGAGGCCTCTTTGATTTGAGTGTTAATGGATGGATGTAAGTGGGCACCATACAACTAGACAAGCTGCAGCTTAAAAGTTTTTAAGAGATTAATGAAGGTGGCATTGTATGGTGGAAGATTTTTGGTTTCCTGATGTGAATGAAATATACAGGTGGGAGATGAAAGCAGACAATTGTTGTTTACATGTAGCTGAGATTTATATTTTGATAACACTGAATATATTTTAATTTGGGAAGTTGAGAGCACTGAATTTAATTGTCTTATTTAATGGTAACTCTGTATTGAGAAGACATGATTTGAAGGATTTTAGCTACACGAGAGATAAGGGAACATAACTGTTCAGATGACAGACAAGAAATTTTATATTGAGTTGAATGGTAAAATGGAGAGAAATTATATATTGAGTTGAATAGTCAAATGGATTGCAATATGCTAGAGTCTCTCTTAGTATTTTAGTGTATGACTGGTACTGGCTTCAACCAGGTTGATGGAAAAATATGCATTACGCAACTCATGCATCATCGATCTAGAACATCTAATAATTTGTGTTTTAAGTTGATGCACTTTTCTACTATGGAAATTCTTTAGAAGGCAATATGGACTGCATTTTAGCTAGGTGGAGTAACTTGGAAGTGGCCGTTGTGCACGTGTAG

Ace file of the UniGene sp_v2.0_unigene7676 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA recognition motif-containing protein [Arabidopsis thaliana] gb\|AAM10328.1\| At2g44720/F16B22.21 [Arabidopsis thaliana] gb\|AAN18203.1\| At2g44720/F16B22.21 [Arabidopsis thaliana] gb\|AEC10458.1\| RNA recognition motif-containing protein [Arabidopsis thalia	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	rna binding	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	71%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXS9

Fln msg: your sequence is longer than subject: 562 - 376

Fln protein: MMNPQTQKNKGFAFIRYASVDQAKRACTELKNPQVKGKVCGVSPSQDSDTLFLGNICKTWTKEALREKLKSFGIDNIEDLTLVEDPKDDGMNRGFAFLEFSARSDAMNAYKRLQKRDVVLGTDKTAKVSFAETFVEPDEEVMAQVKTVFVDGLPPSWDEDRIKEQFKKYGDIEKIQLARNMPSARRRDFGFVTFSTHDAAVACIDGVNNNGLGEGDSKVKVKARLSKPHQKGRLLKHGVRGGYKIGRGRGSTRGGRGPWVRAPAHFEPRRFGGRGGRFIGRGGQVAGRGVKRPLGRNAYPPVPERLPSRHLPPYERVRDRRPPAPAYPRGNARRDYGRRDEPYDDRQVRPSRSASDFATRAAAGRRSSYRDSYANRGPSSYSDSAPPRGVERTASRRPAYPEESYGRRMDKPYRDSRGRDYDNVSGSKRPYSAVEEPSRYGEPPMRNSRARLEYGVSASASQYGDYGDSTRLGRGSQLGYGGSARQDSYGLYDGHQSSVGYGGSKTYGSLGGSDAGGTYSSYGNDYLSGGTDIGSGSYSSLYSSRNMGGGYLSGSGSGSYY*

Protein Length: 563

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAATGAAGGTGAAGAAGAGGAGGATGAGCAACATGAAGTTGTGAAGGAAAGACGCAAGCGAAAGGAATTTGAAGTATTTGTTGGTGGCCTTGACAAGGACGCTGCTGAAGAAGATCTGAGAAAAGTATTTAGTGAAGTTGGCGAAGTGGTTGAAATCCGACTT_-_ATGATGAATCCACAAACACAGAAAAACAAGGGATTTGCCTTTATACGTTATGCAAGTGTTGATCAAGCTAAGCGAGCTTGCACAGAACTCAAGAATCCACAGGTTAAGGGTAAAGTTTGTGGGGTTTCACCTAGCCAGGACAGTGACACACTTTTCTTGGGAAATATATGTAAGACATGGACTAAGGAAGCTCTAAGAGAGAAGTTGAAGAGCTTTGGCATTGATAATATTGAGGATTTAACTCTAGTTGAAGACCCTAAAGATGATGGAATGAATCGTGGCTTTGCCTTTCTAGAGTTCTCAGCTCGTTCAGATGCCATGAATGCATATAAACGGCTGCAGAAGAGAGATGTTGTTTTGGGTACTGATAAAACTGCAAAGGTGTCGTTTGCAGAGACATTTGTCGAGCCTGATGAAGAAGTTATGGCACAGGTTAAGACTGTATTTGTTGATGGGTTACCACCTTCCTGGGATGAGGATCGAATCAAAGAGCAATTTAAGAAATACGGTGATATCGAGAAAATTCAGTTGGCACGCAACATGCCTTCAGCTAGGCGGAGGGACTTTGGATTTGTTACTTTTTCAACCCATGATGCTGCAGTAGCATGTATAGATGGAGTTAATAACAATGGGCTTGGAGAAGGTGATAGTAAGGTGAAGGTGAAGGCTAGATTGTCAAAGCCTCATCAAAAAGGAAGATTATTAAAACACGGTGTTCGAGGTGGTTATAAGATTGGGCGTGGTCGTGGCAGTACACGTGGTGGCAGGGGCCCATGGGTTCGTGCTCCTGCCCATTTTGAGCCCCGGAGGTTTGGAGGTCGTGGTGGCCGTTTCATTGGACGAGGAGGTCAAGTTGCAGGTCGTGGAGTAAAGCGTCCTCTGGGGCGCAATGCATATCCACCTGTACCAGAGAGACTCCCAAGTAGGCATTTGCCACCCTATGAAAGGGTACGAGATAGGCGCCCGCCAGCTCCGGCATATCCAAGAGGTAATGCAAGGAGGGATTATGGAAGACGAGACGAACCTTATGATGATCGTCAAGTGCGACCTAGTCGATCAGCTTCTGATTTTGCTACTCGTGCTGCTGCGGGAAGGCGGTCATCCTATAGAGATAGTTATGCAAATCGTGGGCCTAGCAGCTATTCAGACAGTGCACCTCCTCGAGGGGTGGAAAGGACTGCATCACGTAGACCTGCCTATCCAGAAGAAAGCTATGGTCGACGCATGGATAAGCCTTATCGTGATAGCCGTGGTCGTGATTATGACAATGTTTCTGGATCAAAACGTCCATATTCAGCAGTGGAAGAACCATCTAGATATGGAGAACCTCCTATGAGAAACTCGAGGGCTCGTTTGGAATATGGTGTCAGTGCTAGTGCATCGCAGTATGGTGACTATGGTGATTCCACTAGACTTGGGAGAGGCTCCCAGCTAGGCTATGGGGGTAGTGCTAGACAGGATTCATATGGCTTATATGATGGACACCAATCTAGTGTGGGTTATGGAGGAAGTAAAACGTACGGTTCTCTTGGGGGCAGTGATGCTGGTGGAACATATTCCAGCTATGGCAATGATTACTTGTCCGGTGGAACTGATATTGGTAGCGGTTCATATTCATCTCTATATTCAAGCCGTAATATGGGAGGTGGATACTTATCCGGCAGTGGTTCAGGATCTTATTATTAA___ATTATCTGTGTTCACGAGGATGTTGTAGTCTAGTTTCTACCAATCAATACCAAGTCTTCAGCTATTATTACTAAAGGAGGCCTCTTTGATTTGAGTGTTAATGGATGGATGTAAGTGGGCACCATACAACTAGACAAGCTGCAGCTTAAAAGTTTTTAAGAGATTAATGAAGGTGGCATTGTATGGTGGAAGATTTTTGGTTTCCTGATGTGAATGAAATATACAGGTGGGAGATGAAAGCAGACAATTGTTGTTTACATGTAGCTGAGATTTATATTTTGATAACACTGAATATATTTTAATTTGGGAAGTTGAGAGCACTGAATTTAATTGTCTTATTTAATGGTAACTCTGTATTGAGAAGACATGATTTGAAGGATTTTAGCTACACGAGAGATAAGGGAACATAACTGTTCAGATGACAGACAAGAAATTTTATATTGAGTTGAATGGTAAAATGGAGAGAAATTATATATTGAGTTGAATAGTCAAATGGATTGCAATATGCTAGAGTCTCTCTTAGTATTTTAGTGTATGACTGGTACTGGCTTCAACCAGGTTGATGGAAAAATATGCATTACGCAACTCATGCATCATCGATCTAGAACATCTAATAATTTGTGTTTTAAGTTGATGCACTTTTCTACTATGGAAATTCTTTAGAAGGCAATATGGACTGCATTTTAGCTAGGTGGAGTAACTTGGAAGTGGCCGTTGTGCACGTGTAG

Fln Alignment:

Contig7676___DYGRRDEPYDDRQVRPSRSASDFATRAAAGRRSSYRDSYANRGPSSYSDSAPPRGVERTASRRPAYPEESYGRRMDKPYRDSRGRDYDNVSGSKRPYSAVEEPSRYGEPPMRNSRARLEYGVSASASQYGDYGDSTRLGRGSQLGYGG-SARQDSYGLYDGHQSSV--GYGGSKTYGSLGGSDAGGTYSSYGNDYLSGGTDI
A9NXS9______________DYGRRDEPYDDRQVRSSRSAPDFSTRAAAARRSSYRDSYANRGSGSYSDNAPPRGVSRTVSRRPPYPEESYGRRIDKPYRDSRGRDYDSVSGSKRPYSAVEEPPRYGEPAMRNSRARLDYGVSASASQYGDYGESVRLGRGSQLGYGGSSARQDSYGLYDGHQSRVGSGYGGSKTYGSLGGSEAGGTYSSYGNDYLSSGADI

SNPs (tot: 86)

Position	A %	C %	G %	T %	Probability
281		10		90	0.90298
518		10		90	0.90298
664		9		90	0.999872
828	5	60	35		1.0
914	87	12			0.992554
915		12		87	0.992554
916	87	12			0.992554
918		87		12	0.992554
992	33		66		0.997452
1686			12	87	0.992554
1687	12			87	0.992554
1688	87		12		0.992554
1690	87		12		0.992554
1693	12	87			0.992554
1694	87		12		0.992554
1697	12			87	0.992554
1698	12	87			0.992554
1700	87		12		0.992554
1701	87			12	0.992554
1705		85	14		0.993533
1706	14		85		0.993533
1707		14		85	0.993533
1721			16	83	0.994512
1722	16	83			0.994512
1723		83	16		0.994512
1725			16	83	0.994512
1726	16			83	0.994512
1727		16		83	0.994512
1728	16			83	0.994512
1730	83	16			0.994512
1731		16		83	0.994512
1732	16		83		0.994512
1736		83		16	0.994512
1737		16		83	0.994512
1738	16			83	0.994512
1739		16		83	0.994512
1742		83		16	0.994512
1743	50		50		1.0
1752	20			80	0.995493
1753	20			80	0.995493
1754		80	20		0.995493
1755	80		20		0.995493
1756		80		20	0.995493
1758	20			80	0.995493
1759		20		80	0.995493
1760		80	20		0.995493
1763		80	20		0.995493
1890	66			33	0.997452
2255	9			90	0.999842
2256			9	90	0.999872
2259	9	85		4	0.999726
2393	11			88	0.923564
2394		11	11	77	0.968132
2395		11		88	0.923564
2396		14	14	71	0.984337
2397	14			85	0.993533
2399	16			83	0.994512
2401		16		83	0.994512
2402		16	83		0.994512
2403	16			83	0.994512
2404	16			83	0.994512
2405			16	83	0.994512
2408		16	83		0.994512
2409	16		83		0.994512
2410	83	16			0.994512
2411			16	83	0.994512
2412	16			83	0.994512
2414	83		16		0.994512
2544	11	88			0.923564
2546			11	88	0.923564
2547	11	88			0.923564
2548	88		11		0.923564
2551	11			88	0.923564
2552		11		88	0.923564
2558	11			88	0.923564
2559		77	11	11	0.968132
2560		77	22		0.999999
2561	11			88	0.923564
2562		88	11		0.923564
2563	11	77			0.968132
2565		88	11		0.923564
2582	66			33	0.997452
2583			66	33	0.997452
2584		33		66	0.997452
2586	66			33	0.997452
2598	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain