SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7673

Length: 1194 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7673 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C2H2-like zinc finger protein [Arabidopsis thaliana] gb\|AAL91183.1\| unknown protein [Arabidopsis thaliana] gb\|AAN15705.1\| unknown protein [Arabidopsis thaliana] gb\|AEE85082.1\| C2H2-like zinc finger protein [Arabidopsis thaliana]	-	-	1.0e-39	42%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	56%
Blast2go	c2h2-like zinc finger protein	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	68%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: E0CUZ7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 223 aas, your sequence is shorter than subject: 204 - 703

Fln protein: LNHRRHTRMHRRRLNMEKEDLRKERANIAAFWDKLSVEEARQVVSFNNVMLKEVPETSIVRTLSSFIQQPALSSLPHFYLKAGAALLDVVQVKSSKFPLAAKDLFNILDDASERTFLCAGSSVSVQRLVFEGEGGNVGPEVKNLVASLGFLVEQKLVKAWIADKDAEALRCQKELVEGRRSYPEEASRAS*KKTFEKTKAARV*

Protein Length: 205

Fln nts: CTAAATCATCGGAGGCACACTCGGATGCATCGCCGTCGTTTGAACATGGAAAAGGAGGATTTGCGCAAAGAAAGGGCAAACATAGCTGCTTTTTGGGATAAGCTTTCTGTTGAGGAGGCTAGACAAGTTGTCTCATTCAACAACGTTATGTTGAAGGAGGTGCCTGAAACATCCATTGTCAGGACCCTATCATCTTTTATTCAGCAGCCTGCACTTTCCTCTCTGCCACATTTTTATCTCAAGGCTGGGGCTGCTCTACTGGATGTGGTGCAAGTCAAATCATCCAAGTTTCCACTTGCTGCCAAAGATCTATTCAACATATTGGATGATGCAAGTGAAAGGACCTTTTTATGTGCAGGATCATCTGTGTCTGTACAAAGGCTTGTATTTGAAGGAGAAGGAGGAAATGTTGGACCAGAGGTGAAGAATCTGGTTGCTTCCCTGGGTTTCTTGGTTGAGCAGAAATTGGTCAAGGCATGGATAGCTGATAAGGATGCAGAAGCTCTTCGCTGTCAGAAGGAGCTTGTCGAAGGAAGAAGAAGCTATCCAGAAGAAGCAAGCAGAGCTTCTTGAAAAAAAACGTTTGAAAAAACTAAGGCAGCAAGAGTCTAGAGAAAAAGGGAGAAGAGTTGGCAATCCAGGTATTGCAGTAGGTAGGGGTGCTGTTGATGGTGCAGATATTTTTACAGAGCTAGTTGGAGTCCATTCTCTGATAGCAGTTGAAACCGGCACTCCATCTACAGCACAGGATCTAAGCAATCAAGAACAATCAGGTGATGTTACTAGCTTTGAGGTGGAAAGGAGTGAAAAGGTTGAATCAAAGATTTCACAATTTCTTGGACAAGAATTTTCCCATGGATCAAATTCTGTTAATAAGAATGCTGATCAGATCCATATTTGTGAAGAAAATACACACTTGAATATAGATAGAGTCTCTGCAGAAGAAGTTGGTGAAGCACAAAATGCAAGTATCTTTGCAGAAGAAGCTGGTGAAGCACAAAATGCAAGTAATGTGAGAAGAAATCATACTGATTTTGACTTGAGCAATTCTCACGTTTCAGCAGCAGAGGCTCCACTGACCACTGTGCCATGTTTGGCAAGCAAACAAGGAGATGAGGATAATAGCATTTTGGAATATGATACGAGGACTGTCATGCATTCAGACAAGCAATTTGTGCAGGGCTGGAGACAACG

Fln Alignment:

Contig7673___LNMEKEDLRKERANIAAFWDKLSVEEARQVVSFNNVMLKEVPETSIVRTLSSFIQQPALSSLPHFYLKAGAALLDVVQVKSSKFPLAAKDLFNILDDASERTFLCAGSSVSVQRLVFEGEGGNVGPEVKNLVASLGFLVEQKLVKAWIADKDAEALRCQKELVEGRRSYPEEASRAS*KKTFEKTKAARV*RKREKS
E0CUZ7______________LNIDK-DSTKNRNLLGAFWDKLSVDEAKEVVSFKNVSLEEVSGSSIVRALTSFVRKPGFSSLPQVYMKAGSALLDIVQSRPSRFPISSQDLFSILDDASEKTFLCAGTAESMQKYVFDGEAGKIGLEMKNLVACTCFLVEQKLVKAWLADKDAEALRCHKLLVE-----EEEAAQKRQAELLERRRQKKLRQKEQKA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
56		25		75	0.996473
172	20			80	0.995493
173		20		80	0.995493
174	20			80	0.995493
175		80		20	0.995493
1131		33		66	0.997452
1132		33		66	0.997452
1133		33		66	0.997452
1134	33		66		0.997452
1135		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain