SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7664

Length: 606 nt

Origin of reads: Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7664 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger, RING-type n=1 Tax=Medicago truncatula RepID=A2Q4Q8_MEDTR	-	-	4.0e-34	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	ring finger protein	-	-	1.67315e-42	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	1.67315e-42	94%

Source	InterPros	Term	Type	Identity
Sma3	Di-trans-poly-cis-decaprenylcistransferase-like	IPR001441	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Di-trans-poly-cis-decaprenylcistransferase-like, conserved site	IPR018520	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
422	85	14			1.0
429	14	85			1.0
433			85	14	1.0
455		83		16	0.994512
456		83	16		0.994512
457	16	83			0.994512
458		83	16		0.994512
460		83	16		0.994512
461	16			83	0.994512
462		16		83	0.994512
463	16			83	0.994512
467		16		83	0.994512
468	16		83		0.994512
469	16	83			0.994512
470	83		16		0.994512
471		83	16		0.994512
477	83	16			0.994512
478			16	83	0.994512
486	80			20	0.995493
487		80	20		0.995493
489	80			20	0.995493
491	80			20	0.995493
492		60	40		1.0
493		60		20	0.99255
494	80		20		0.995493
495	20			60	0.99255
498			40	60	1.0
502	40			60	1.0
509			50	50	1.0
511		50		50	1.0
512			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain