SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7596

Length: 1883 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7596

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bromodomain-containing protein n=1 Tax=Ricinus communis RepID=B9SV90_RICCO	-	-	7.0e-32	26%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	27%
Blast2go	bromodomain-containing protein	-	-	7.74603e-33	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bromodomain	IPR001487	-	0.0	-
Sma3	Bromodomain, conserved site	IPR018359	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HEP6

Fln msg: your sequence is shorter than subject: 546 - 921

Fln protein: LKGTALRDGKRDLLIDENRRGTYKPWNMLMRVTLSVFAIFGENPKQLVHNGIQSEHAYARSLARFSVDLGPAAWKIVAKKIEKSMCSNVPFGQGWVGKDEAPAGALLLCEEIKDQQTLAQTSTVSSDFTATKAQLNLFAANQATNDQASAPSSVATVAQSTGLASLSQSTGLPVPLSMSSQSANNTNFQTPLQGVKQSELKSASSIAKSSEVNLAGAKFTSDVSQSKLLEIVSRSNRLMQWASAKPAEHVQPVSSVQTTTSGSTGFDRRLDGNSNCVAREPYGDTKLSGISSSVHVALSSVEPSLPNYQDKYRAVWTPPSTSSQEYGTQDLNWLVNSAQGKMPGLQQRPSNMPINTQMFGFSSVPSRQTTVSRGDVVAEGWVQSRATDLAHADGSPRIKMQTMPDAYYNMQQIQARPSSSVPQFIQQQAPMDMSLYMRSQLSWMHPQNLSSHATSQGGVNSMVELPNSTTQSPFNYRQIPMGADTSQSQKQLWKSLPSKQPSQQTSEFSNSIPPDLNVGFQSPRSPVRQSSGMLVDSQPDLALQL*

Protein Length: 547

Fln nts: CTCAAGGGAACAGCTTTGAGAGATGGGAAAAGAGATCTACTGATAGATGAAAATCGTCGTGGCACTTACAAACCTTGGAATATGTTAATGCGTGTGACTTTGTCTGTCTTTGCTATTTTTGGCGAGAATCCAAAGCAGCTAGTTCATAACGGGATTCAGTCAGAGCATGCCTATGCAAGAAGTCTTGCTCGTTTCTCTGTAGATCTAGGCCCTGCAGCCTGGAAGATTGTAGCCAAAAAGATTGAGAAATCTaTGTGTTCTAATGTGCCATTTGGTCAAGGATGGGTGGGTAAAGATGAAGCTCCTGCTGGTGCTTTGTTATTGTGTGAGGAGATCAAGGATCAACAGACCTTGGCTCAGACAAGTACAGTTTCAAGTGACTTTACTGCAACCAAGGCTcAATTAAATCTTTtTGCAGCTAATCAAGCAACAAATGATCAAGCCTCTGCACCGTCAAGTGTGGCAACAGTTGCTCAATCTACAGGACTAGCATCTCTGTCTCAATCTACCGGGTTACCTGTGCCTCTATCTATGAGTTCACAGTCAGCCAACAATACAAATTTTCAAACGCCTTTGCAAGGAGTCAAACAGAGTGAGTTGAAATCAGCTTCATCAATTGCTAAATCCAGTGAAGTCAATCTGGCAGGTGCGAAATTTACCTCAGATGTATCCCAGTCAAAATTGCTTGAGATTGTCTCCAGAAGTAACCGACTTATGCAATGGGCATCTGCCAAACCGGCTGAACATGTGCAACCTGTTTCAAGTGTCCAGACGACAACTTCTGGCAGCACTGGTTTTGATAGAAGGTTGGATGGTAATTCCAATTGTGTGGCCAGGGAACCATATGGTGATACAAAACTATCAGGCATTTCTAGTAGTGTGCATGTTGCATTGAGTTCTGTAGAGCCTTCTCTACCAAACTATCAAGACAAGTACCGAGCAGTTTGGACGCCTCCATCTACAAGTAGTCAAGAATACGGCACACAGGATCTGAATTGGTTAGTTAATTCAGCCCAAGGCAAGATGCCAGGGTTACAGCAGAGACCTTCCAATATGCCTATCAATACTCAGATGTTTGGATTTTCTTCTGTCCCATCAAGACAAACGACAGTGAGCCGAGGGGATGTTGTGGCAGAAGGATGGGTGCAATCTAGAGCTACAGATTTAGCTCATGCAGATGGTAGCCCTCGAATTAAGATGCAGACAATGCCTGATGCATATTATAATATGCAGCAGATCCAAGCAAGGCCATCATCCAGTGTTCCTCAATTTATTCAACAGCAGGCACCCATGGACATGTCTCTGTATATGCGTTCACAGCTGAGCTGGATGCATCCTCAGAATCTGTCATCTCATGCCACTTCTCAGGGAGGTGTAAACTCGATGGTAGAATTGCCAAATTCAACCACACAGAGTCCTTTTAATTACAGGCAGATACCAATGGGAGCTGATACATCCCAATCTCAAAAACAACTATGGAAGTCTTTACCTTCAAAACAACCTTCTCAACAGACATCTGAATTTTCAAATTCGATTCCACCAGATTTGAATGTAGGGTTTCAGTCTCCAAGGTCTCCAGTTAGGCAGTCTTCTGGAATGCTGGTTGATTCACAACCTGATTTGGCCCTCCAGCTTTGA___TTTATTGAGCATTTATCACCAGATTCATTGATTTTCTGGTTATAAGCATGTATCTCCATTTTCAATCTCTGTACATTTCCAAGGTTTATACAGACTACAGAGATGGGGTTTCCTAAGAAAGGACCCATTATGTTGTAAAAGAGCTGTACATGTACCAATTTCTAGTTCACATAAGCTAGGTCTACTGTTCAGTGTTAACATTATATTTACAAATTTCATAATCTCAGCAAATATTCTTCTGATGC

Fln Alignment:

Contig7596___KGTALRDGKRDLLIDENRRGTYKPWNMLMRVTLSVFAIFGENPKQLVHNGIQSEHAYARSLARFSVDLGPAAWKIVAKKIEKSMCSNVPFGQGWVGKDE-APAGALLLCEEIKDQ----QTLAQTSTVSSDFTATKAQL-----NLFAANQATNDQASAPSSVATVAQSTGLASLSQSTGLPVPLSMSSQSAN--NTNFQTPLQGV-KQSELKSASSIAKSSEVNLAGAKFT---SDVSQSKLLEIVSRSNRLMQWASAKPAEHVQPXXXXXXXXXXXXXFDRRLDGNSNCVAREPYGDTKLSGISSSVHVALSSVEPSLPNYQDKYRAVWTPPSTSSQEYGTQDLNWLVNSAQGKMPGLQQRPSNMPINTQMFGFSSVPS-RQTTVSRGDVVAEGWVQSRATDLAH-ADGSPRIKMQTMPDAYYNMQQIQARPSSSV-PQFIQQQAPMDMSLYMRSQLSWMHPQNLSSHATSQGGVNSMVELPNSTTQS-PFNYRQIPMGADTSQSQKQL-WKSLPSKQPSQQTSEFSNSIPPDLNVGFQSPRSPVRQSSGMLVDS-QPDLALQL
F6HEP6______________KGLLSKFGRKPFVVDENRRATYSISNQPIVGSETIFNTFEAEAKQLVAVGLHADHSYARSLARFAATLGPVAWKVASQRIEQALPVGSKFGRGWVGEFEPLPTPVLMLETRIQKEPFLVPKLQHNAVLRKDEKISKPPVPAKEHSVSGPTLEGKQSLFCPASAPTTERKQPLFGSAGTKSTP-PVNTGNQQQNPLSRNFTQPEKKVLKQVELNCPPS-ASQNHADLVSEKQLLNGSEAATPRSMEAVSRSRNILQSLPFK----LPDTNGVVAGGLTNGKPSSRIDGNK-----------MIGSASDTVPSQLARVPTYLPH---------------GAEQGLSDPVQLMRKLAEKAQKQQKSSNHSPVDSPP-AMPSIPSPRSDSSNAAATAARAWMSIGAGGFKPVAENSITPKNHISADSLYN-------PTRELHPQVTRFRGEFPVS-------GGMHFQSEKNSFPLQAFVPQPVRIGEAQFQNRPVIFPQL-VTADLSRFQMQSPWQGL---NPNTQPRHRQETLPPDLNIGFQPSGSPVRQSSGVLVDSQQPDLALQL

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
853	66		33		0.997452
978	83	16			0.994512
979			16	83	0.994512
980	83			16	0.994512
983			83	16	0.994512
984		83	16		0.994512
987	83	16			0.994512
988		83		16	0.994512
989	83			16	0.994512
992	83	16			0.994512
994		83	16		0.994512
996		16	83		0.994512
998	80	20			0.995493
1000	20			80	0.995493
1026	14		85		0.993533
1030		85		14	0.993533
1200		16	83		0.994512
1203			83	16	0.994512
1433		33	66		0.997452
1435		66		33	0.997452
1436	66	33			0.997452
1438	66			33	0.997452
1439			33	66	0.997452
1444	66			33	0.997452
1448		33	66		0.997452
1449	66			33	0.997452
1453		33	66		0.997452
1455		33		66	0.997452
1456	66			33	0.997452
1800		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain