SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7588

Length: 1231 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7588

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial substrate carrier family protein [Arabidopsis thaliana] emb\|CAB81917.1\| putative protein [Arabidopsis thaliana] gb\|AAK96620.1\| AT5g01340/T10O8_50 [Arabidopsis thaliana] gb\|AAM19967.1\| AT5g01340/T10O8_50 [Arabidopsis thaliana] gb\|AED90329.1\|	-	-	82%
FL-Next	sp=Mitochondrial carnitine/acylcarnitine carrier-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	28%
Blast2go	mitochondrial substrate carrier family protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	succinate transmembrane transport	GO:0071422	Biological Process	86%
Blast2go	mitochondrial transport	GO:0006839	Biological Process	86%
Blast2go	binding	GO:0005488	Molecular Function	86%
Blast2go	succinate transmembrane transporter activity	GO:0015141	Molecular Function	86%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%
Blast2go	plastid	GO:0009536	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q93XM7

Fln msg:

Fln protein: MAGDGAANPSNKLSSAENKPKNDGVAPPYMKAVSGSLGGMVEACCLQPIDVIKTRLQLDRVAHYRGILHCGSTIAKTEGVRALWKGLTPFATHLTLKYTLRMGSNAVLQGAFSDSDTGKLSNKGRMMAGFGAGVLEALMIVTPFEVVKIRLQQQRGLAPELLKYKGPIHCATSIVREEGFLGLWAGAAPTVMRNGINQSAMFTAKNAFDGLLWKKHEGDGRVLLPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRSVETGELKYKGMFHALRTIFAEEGLLALWKGLIPRLMRIPPGQAIMWAVADQVTGLYERRYLHHAHA*

Protein Length: 327

Fln nts: ATGGGGAATCTGGGAATCTGTTCAAAAGCATTTCTTCGATATCGGTCGGTTTTTCGAGGATACTGTTTTTGGCTATGCGATTTGATTTTTGTTTCCGGCTCCTGATTCAGATTCTTTTGAGCCCATCTTCTGCCATGCCATTGTAACCCACTAGCAGAAAATCCTCCCAGTTTGGCATCTCC_-_ATGGCAGGAGATGGTGCTGCTAATCCCAGTAACAAACTTTCTTCAGCAGAAAACAAGCCCAAAAATGATGGTGTGGCTCCTCCATATATGAAGGCAGTCTCTGGGTCACTGGGGGGCATGGTGGAAGCCTGCTGCCTGCAGCCCATAGATGTGATCAAGACAAGGCTTCAACTGGACAGGGTAGCGCATTACAGGGGCATTCTGCACTGTGGTTCGACCATTGCGAAAACAGAGGGTGTGAGAGCTTTGTGGAAGGGGCTCACACCCTTTGCAACCCATCTGACCCTCAAGTATACATTGAGAATGGGATCCAATGCAGTGCTGCAGGGGGCCTTCTCAGATTCTGACACCGGGAAACTCAGCAATAAGGGCAGGATGATGGCTGGTTTTGGGGCAGGAGTGCTGGAGGCCCTCATGATTGTTACCCCATTCGAGGTGGTCAAGATTAGGCTACAACAGCAAAGAGGGTTAGCCCCTGAGCTTCTCAAATATAAAGGCCCCATCCATTGTGCAACTAGCATTGTCCGTGAAGAAGGTTTCCTTGGCCTTTGGGCTGGTGCAGCACCGACTGTTATGAGGAATGGAATCAATCAATCAGCAATGTTCACAGCCAAGAATGCTTTTGATGGGCTCCTGTGGAAAAAGCACGAGGGAGACGGTCGAGTTCTCCTGCCATGGCAATCCATGATATCAGGATTTTTGGCAGGAACTGCTGGTCCTGTTTGCACGGGCCCTTTCGATGTCGTGAAAACAAGGTTAATGGCTCAAAGTAGATCTGTTGAAACAGGTGAACTCAAATATAAGGGCATGTTTCACGCGCTGAGAACAATTTTTGCAGAAGAAGGATTGCTAGCCTTGTGGAAGGGATTGATTCCAAGGCTGATGAGAATACCTCCAGGACAGGCTATCATGTGGGCAGTGGCAGACCAGGTCACTGGTTTGTATGAAAGAAGATACTTGCACCATGCTCATGCTTAA___ATGTTTTAGGCATATATGTTTAAGTGAGAACTTAATGCTAGTTCCATCATGATGAAGCCTACTAGAGCATA

Fln Alignment:

Contig7588___VAPPYMKAVSGSLGGMVEACCLQPIDVIKTRLQLD------RVAHYRGILHCGSTIAKTEGVRALWKGL-TPFATHLTLKYTLRMGSNAVLQGAFSDSDTGKLSNKGRMMAGFGAGVLEALMIVTPFEVVKIRLQQQRGLAPE--------LLKYKGPIHCATSIVREEGFL-GLWAGAAPTVMRNGINQSAMFTAKNAFDGLLWKKHEGDGRVLLPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRSVETGELKYKGMFHALRTIFAEEGLLALWKGLIPRLMRIPPGQA
Q93XM7______________MADAWKDLASGTVGGAAQLVVGHPFDTIKVKLQSQPTPAPGQLPRYTGAIDAVKQTVASEGTKGLYKGMGAPLATVAAFNAVL-FTVRGQMEGLLRSEAGVPLTISQQFVAGAGAGFAVSFL-ACPTELIKCRLQAQGALAGASTTSSVVAAVKYGGPMDVARHVLRSEGGARGLFKGLFPTFAREVPGNATMFAAYEAFKRFL--AGGSDTSSLGQGSLIMAGGVAGASFWGIVYPTDVVKSVLQVDDYK----NPRYTGSMDAFRKILKSEGVKGLYKGFGPAMARSVPANA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
34	14			85	0.993533
36		85	14		0.993533
37			14	85	0.993533
38			14	85	0.993533
39		85	14		0.993533
185	85		14		0.993533
929			10	89	0.999919
934	90			10	0.999898
935	90	10			0.999898
937	90	10			0.999898
964		13	86		1.0
965			13	86	1.0
969	86	13			1.0
970	86	13			1.0
971		86		13	1.0
972	86			13	1.0
977	85			14	1.0
1234	44			44	1.0
1235	25			75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
767	779	AATC AATC AATC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain