SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7521

Length: 1396 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7521

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CCT_2 multi-domain protein	-	-	5.0e-05	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	protein tify 3b	-	-	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tify	IPR010399	-	0.0	-
Sma3	CO/COL/TOC1, conserved site	IPR018467	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P132

Fln msg: Overlapping hits, possible frame ERROR between 638 and 635,

Fln protein: MSPTTSVDLKFLGVHNASVAKDSNSLEFGSEKQLQKLKFMQDLSRIKPQMIQKALSSIGISEYTKVNLTHVNLQAEGFNGRSESSSPTEMLKLFPISTGTGSSFGSKPSVTENKITLPLTIGQNDPDSSRSVSAKTLGQQATAPLSxxxNGAVNVYDVPAEKAEEIMRLCSANSSSNTRTSTIPGTKIEQVSKPLSSKPGSNSVNEIQAQRPSVGLEIVRKLSLQRFLQKRTERFNRVAPYTKMTTAPLPAKAEEESDNQITLTLACSSQNF*

Protein Length: 274

Fln nts: GCACTTTCTTCTGCTCACCTAATCCACGATCTGCCCGTCATTTATTTATTTTCTTATTCGCCACGGATTATGAGAATTGCCTTCATTTATTCGGCGGCTGATTGATCTCCATCTCTTGACTTGGCGTCGCTTCAAGGAAAGGCATATTGCAGTGGAAATTCTCTGGATTTAGCGGAATTATTGAATTTGAAACA_-_ATGTCGCCAACTACATCTGTTGATCTGAAGTTTCTGGGTGTTCATAACGCGTCTGTGGCAAAAGACAGTAATAGTTTGGAATTCGGCTCTGAAAAACAGCTACAAAAGCTGAAATTCATGCAAGACCTGTCGCGGATAAAACCGCAGATGATTCAGAAGGCGCTTTCGTCGATCGGGATTTCAGAGTACACGAAGGTCAATTTAACTCATGTCAATCTTCAGGCCGAGGGCTTTAACGGAAGATCTGAGTCATCAAGTCCCACTGAAATGTTGAAGTTATTTCCCATAAGCACTGGCACCGGTTCCAGTTTTGGTTCAAAACCTAGTGTTACAGAAAATAAAATAACCTTGCCTTTGACGATTGGCCAAAATGACCCGGATTCGAGTAGATCTGTTTCGGCAAAAACTCTCGGGCAACAGGCCACAGCTCCACTCTCTxxxxxxxxxAATGGTGCGGTAAATGTTTACGATGTGCCGGCTGAGAAGGCTGAAGAAATTATGAGGCTTTGCAGCGCCAATAGCTCGAGCAATACAAGAACATCCACAATTCCCGGCACTAAAATCGAACAGGTATCGAAACCGCTGTCTTCCAAGCCTGGATCGAACTCTGTCAATGAAATTCAAGCTCAAAGACCGTCAGTAGGCCTGGAAATAGTGAGGAAATTATCTCTGCAACGCTTTCTCCAAAAGCGGACGGAGAGATTCAACAGGGTGGCTCCTTACACCAAGATGACGACCGCGCCATTACCAGCTAAAGCAGAGGAGGAATCAGATAACCAGATCACGCTCACTTTGGCTTGTTCATCACAAAATTTTTAA___ACGTCCGGTCAATGCTAATGACTTTTAATTGCATAACGTGACAATGCTGTATGTTACTTTTAACCGGACCGCTTTTATCGACTTTCAACTGGCTGCGACAGAAGCTTCAAGGAAGTTGCGACCCACGCGTTTTCTGCATCGACGATCCCGAGTACACCGTGATAAGGCAACAAACTTGTCCCTACTACCTAGTTTTGTCTCCACTCATTGAAAGAGTTGGGTACTGCGTCCCACGAAAGTGTGCAGCAACTTCTTAATGGTGATCTTCATTGACAGCATCAATTGGTAAAATAAAAAACCACTTAATTACTAATTTATTACTAGAGCATGACATGTGTAATCTATTGGTTTTTTATCCCAAATAAAATTGGAAAGCTATTGTTT

Fln Alignment:

Contig7521___MSPTTSVDLKFLGVHNAS-----VAKDSNSLEFGSEKQLQKLKFMQDLSRIKPQMIQKALSSIGISEYTKVNLTHVNLQAEGFNGRSESSSPTEMLKLFPISTGTGSSFGSKPSVTENKITLPLTIGQNDPDSSRSVSAKTLGQQATAPLSIxYNGAVNVYDVPAEKAEEIMRLCXXXXXXXXXXXXIPGTKIEQVSKPLSSKPGSNSVNEIQAQRPSVGLEIVRKLSLQRFLQKRTERFNRVAPYTKMTTAPLPAKAEEESDNQITLTLACSSQNF
A9P132______________MSTSAAVASEFLRFQNASAANGTVANGSTSWTFVPQKQLAKPRFMQDLSRIKPQMMQKVLSSIGLSEDKNADFALVNRQAEDFNRHSEASSHREMLELFPISTGSG--LGSNPRVTENKITLPFAIGQTDPDSSSSVPAKAPEQQSTAQLTIxYNGAMNVYDVSAEKAQAIMRLASANSSRKTRISTISSSKIEQVSKPLPSKPASNAANGNQPQTPPVGLEIAKKLSLQSFLRKRKERFNSVAPYTTMKPVTLPSKAEKESDDQIRLSLASSSQNF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1137	12		81		0.999943
1159	45		54		1.0
1172		54	45		1.0
1189	45			54	1.0
1190	45	54			1.0
1231			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain