SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7517

Length: 3133 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene7517
TGGTTAGAGATCGAGGGTTGAGTCATATTGCCATTTCTTTGTGTAGCGAGTGCATTTTAGAAGTATTGAATTGTACTGGAGGACTTGAAGAATGGGTAGCATCGCTTTTGGTACGAATCCAGGCGGTAAAATTATGAGAGATAGCAGAGGATCAGCCTGCGCTTTCATAATATTGTTTGTGTTGAGTGGAAGCAATTTCATTGCAGTACAATGTTTGAACAAGCCATTCAACGTGTCCTATGATCACCGGGCTGTTATCATAGATGGCCAAAGAAGAATGCTTATATCAGCGGGAATCCATTATCCTCGCGCTACACCCGAGATGTGGCCGCATTTGCTTTCCATGAGCAAAGAAGGCGGAGCGGATGTGATCCAGACTTACACCTTTTGGAATGGTCACGAGCCTGTTAGAGGACAGTACAATTTTGCGGGGAGATATGATCTTGTTAAATTTGTGAAGCTTGTTCAAAATGCTGGGCTTTATTTGCATCTTCGAATAGGCCCCTATGTTTGTGCAGAATGGAACTTTGGGGGATTTCCTGTTTGGTTACGAGACATCCCTGGTATTGAGTTTCGAACTGATAACATGGCATTCAAGGAGGAGATGGAGAAATATGTCACAATGATAGTGAATCTCATGAAAGTGCACAAGCTTTTTTCATGGCAAGGAGGTCCAATTATTTTACTCCAGATTGAGAACGAGTATGGGAATGAGGAACACTCATTTGGTGAGAAAGGAAAACGTTATGTAAAATGGGCTGCGAGTATGGCAGAAGGACTGGATGCAGGTGTACCTTGGATCATGTGTCAACAAAGTGATGCACCAGGGAATATTATAAATTCATGCAATGGTTTCTACTGCGATGGTTTCAAGCCAAATGCATATCACAAGCCCACTCTTTGGACCGAGGATTGGAATGGATGGTTTTCAGCTTGGGGTGGTCGGGTTCCTCATAGGCCTGTGGAAGACAATGCTTTTGCAGTAGCTCGATTTTTTCAACGTGGTGGCAGCTTTCATAATTACTACATGTATTTTGGAGGGACAAACTTTGGCCGCACAGCTGGGGGACCATTTTACACAACAAGTTATGACTATGATGCTCCAATTGATGAATATGGTATGTTGAGGCAACCTAAATGGGGGCATCTGAAGGATCTTCATGCAGCCATAAAACTCTGTGAGCCAGCTCTAATTTCTGTTGATGGAGATCCTCAGTATATACGTTTTGGTCCTCAGCAAGAGGCACATGTATATAAATATTCTGGAGAATCCAAAGTTGCAAATTTGACTGTAATTAGGAAGACAGGGACATGTGCAGCATTTCTTGCTAATATCGATAGTCATTCTTCAGCTACTGTACATTTTAATGGAAAGGTGTTTCATCTACCACCTTGGTCTGTCAGCATATTGCCTGATTGTAAGAATGTGGTATTCAACACTGCAAAGGTTGGATCTCAAACATCCATTGTAAGCACGAAAAGGAGGCCTGCTCTTTCACAAGGAATCTTTGATTCTGAAATTTTGGAACTTGGAGTAAAAGTTTCACAATTATCAAAAGTGTGGAGTGAATATAAAGAGCCAATTGGTCTGTGGGGAGAAGGAAATTTTTCAGCAAAAGGCATATTAGAACACTTAAATGTCACCAAGGATTCTACTGATTATCTATGGTATACGACAAGCATTAATATTTCAGAAGCAGACAGTGCATTCTGGTTGGTACACAATAAATATCCATCCCTTGTCATTGATGCTGTGCGTGATGTGGTCCGTATATTTGTCAATGGTCAGATTGCAGGGAGTTCAAGTGGTTATTGGGTCCGAGTGGAGCAACCTCTGAACTTAAGTATAGGGTACAACGAAATAGCTATTCTCTCTGAAATGATTGGATTACAGAACTATGGGGCTTTCCTTGAAAAAGATGGTGGAGGCTTGAGAGGTTCTGTGACATTACAAGGCCTTGTATCAGGAGATAGAAACCTAACAATGGCATGTTGGGGATATCAGGTTGGTTTAAAGGGTGAATATTTGGAAATCTATTCACCTGAACGACAAGATGGTGTGGAATGGTCAGAAATACGAGAAGAGCCTCAAAAGAGTCCTTTCACATGGTACAAGACAGTTTTTGATGCTCCAGATGGTGACAATCCTGTAACACTGGACTTGGGGAGTATGGGAAAGGGTCAAGTTTGGGTTAATGGGAAGAGTTTAGGGAGGTATTGGCCATCCTACCTTGCACCAGATACTGGTTGTAATGCTGTATGTGATTATCGTGGAGCTTATTATGAAGATAAATGTGCAAGCAACTGCGGAAAGCCTACACAACGTTGGTACCATATTCCTCGTGCTTGGCTGCAGGAAATCAATAATCTGTTGGTTGTTTTTGAGGAGAGTGGAGGAAATCCATTGGAAATCTCAGCTGATGTACGTGTCACTCAAACCATATGTGCGGAAGTCTCTCAATCTCATCCTCCGCCGATTCGTGTCTGGTCCGATTTAATCAATTTGACAGCAGGAGGAGGAGGATACGTTAACATGTATGAATTAACAATTCCATCTCCCGAGGTGCACCTGCAATGTGATGATGGACAAGAAATCGTTTCAATCACTTTTGCCAGTTTTGGAAATCCAGAGGGACATTGTGGACAATATGTTCAAGGGACATGCCACGCAGATACCTCACATTCTGTTGTGATCCAAGCATGTCAAGGAAAGAAGAGCTGCTTAATCCCGGTGTCAACAAAGATATTTGGAGGTGATCCATGCCCAGGAACAACCGAGAAAAGGTTAGCAATTGAGGCAAATTGCATGATTGTGTCAACTGCTCCAGACAGTATTGTACAATCATATTGATGAGATCTTTTATCATTCTAATTAATTAATTCTGGCTCTTAAAAAGATATGCTTAACACTTGATTGTATCAAGCATTTGCAATCCAACAATGGAGTTTACCTCGCATGTGTGAAAATGTTACAGCAGATAACAAAAATCTCAACTTCAAAGTTTGCGTCTCCATCTACACTGGTAAATAGATATGAAATATCTCCATACACGACAATCTTAATGAGAAAACTTCTAGAAGTGCTCATTAAGGTCAATAATACAGATAGAAGTCTATGCATTGATAGATGTAG

Ace file of the UniGene sp_v2.0_unigene7517 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Persea americana RepID=Q0EDB0_PERAE	-	-	65%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	beta galactosidase 9	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-galactosidase.	EC:3.2.1.23	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	73%
Blast2go	Other glycan degradation	00511	73%
Blast2go	Glycosaminoglycan degradation	00531	73%
Blast2go	Sphingolipid metabolism	00600	73%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	73%
Blast2go	binding	GO:0005488	Molecular Function	73%
Blast2go	beta-galactosidase activity	GO:0004565	Molecular Function	73%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	73%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	73%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg: your sequence is longer than subject: 920 - 861

Fln protein: MGSIAFGTNPGGKIMRDSRGSACAFIILFVLSGSNFIAVQCLNKPFNVSYDHRAVIIDGQRRMLISAGIHYPRATPEMWPHLLSMSKEGGADVIQTYTFWNGHEPVRGQYNFAGRYDLVKFVKLVQNAGLYLHLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTDNMAFKEEMEKYVTMIVNLMKVHKLFSWQGGPIILLQIENEYGNEEHSFGEKGKRYVKWAASMAEGLDAGVPWIMCQQSDAPGNIINSCNGFYCDGFKPNAYHKPTLWTEDWNGWFSAWGGRVPHRPVEDNAFAVARFFQRGGSFHNYYMYFGGTNFGRTAGGPFYTTSYDYDAPIDEYGMLRQPKWGHLKDLHAAIKLCEPALISVDGDPQYIRFGPQQEAHVYKYSGESKVANLTVIRKTGTCAAFLANIDSHSSATVHFNGKVFHLPPWSVSILPDCKNVVFNTAKVGSQTSIVSTKRRPALSQGIFDSEILELGVKVSQLSKVWSEYKEPIGLWGEGNFSAKGILEHLNVTKDSTDYLWYTTSINISEADSAFWLVHNKYPSLVIDAVRDVVRIFVNGQIAGSSSGYWVRVEQPLNLSIGYNEIAILSEMIGLQNYGAFLEKDGGGLRGSVTLQGLVSGDRNLTMACWGYQVGLKGEYLEIYSPERQDGVEWSEIREEPQKSPFTWYKTVFDAPDGDNPVTLDLGSMGKGQVWVNGKSLGRYWPSYLAPDTGCNAVCDYRGAYYEDKCASNCGKPTQRWYHIPRAWLQEINNLLVVFEESGGNPLEISADVRVTQTICAEVSQSHPPPIRVWSDLINLTAGGGGYVNMYELTIPSPEVHLQCDDGQEIVSITFASFGNPEGHCGQYVQGTCHADTSHSVVIQACQGKKSCLIPVSTKIFGGDPCPGTTEKRLAIEANCMIVSTAPDSIVQSY*

Protein Length: 921

Fln nts: TGGTTAGAGATCGAGGGTTGAGTCATATTGCCATTTCTTTGTGTAGCGAGTGCATTTTAGAAGTATTGAATTGTACTGGAGGACTTGAAGA_-_ATGGGTAGCATCGCTTTTGGTACGAATCCAGGCGGTAAAATTATGAGAGATAGCAGAGGATCAGCCTGCGCTTTCATAATATTGTTTGTGTTGAGTGGAAGCAATTTCATTGCAGTACAATGTTTGAACAAGCCATTCAACGTGTCCTATGATCACCGGGCTGTTATCATAGATGGCCAAAGAAGAATGCTTATATCAGCGGGAATCCATTATCCTCGCGCTACACCCGAGATGTGGCCGCATTTGCTTTCCATGAGCAAAGAAGGCGGAGCGGATGTGATCCAGACTTACACCTTTTGGAATGGTCACGAGCCTGTTAGAGGACAGTACAATTTTGCGGGGAGATATGATCTTGTTAAATTTGTGAAGCTTGTTCAAAATGCTGGGCTTTATTTGCATCTTCGAATAGGCCCCTATGTTTGTGCAGAATGGAACTTTGGGGGATTTCCTGTTTGGTTACGAGACATCCCTGGTATTGAGTTTCGAACTGATAACATGGCATTCAAGGAGGAGATGGAGAAATATGTCACAATGATAGTGAATCTCATGAAAGTGCACAAGCTTTTTTCATGGCAAGGAGGTCCAATTATTTTACTCCAGATTGAGAACGAGTATGGGAATGAGGAACACTCATTTGGTGAGAAAGGAAAACGTTATGTAAAATGGGCTGCGAGTATGGCAGAAGGACTGGATGCAGGTGTACCTTGGATCATGTGTCAACAAAGTGATGCACCAGGGAATATTATAAATTCATGCAATGGTTTCTACTGCGATGGTTTCAAGCCAAATGCATATCACAAGCCCACTCTTTGGACCGAGGATTGGAATGGATGGTTTTCAGCTTGGGGTGGTCGGGTTCCTCATAGGCCTGTGGAAGACAATGCTTTTGCAGTAGCTCGATTTTTTCAACGTGGTGGCAGCTTTCATAATTACTACATGTATTTTGGAGGGACAAACTTTGGCCGCACAGCTGGGGGACCATTTTACACAACAAGTTATGACTATGATGCTCCAATTGATGAATATGGTATGTTGAGGCAACCTAAATGGGGGCATCTGAAGGATCTTCATGCAGCCATAAAACTCTGTGAGCCAGCTCTAATTTCTGTTGATGGAGATCCTCAGTATATACGTTTTGGTCCTCAGCAAGAGGCACATGTATATAAATATTCTGGAGAATCCAAAGTTGCAAATTTGACTGTAATTAGGAAGACAGGGACATGTGCAGCATTTCTTGCTAATATCGATAGTCATTCTTCAGCTACTGTACATTTTAATGGAAAGGTGTTTCATCTACCACCTTGGTCTGTCAGCATATTGCCTGATTGTAAGAATGTGGTATTCAACACTGCAAAGGTTGGATCTCAAACATCCATTGTAAGCACGAAAAGGAGGCCTGCTCTTTCACAAGGAATCTTTGATTCTGAAATTTTGGAACTTGGAGTAAAAGTTTCACAATTATCAAAAGTGTGGAGTGAATATAAAGAGCCAATTGGTCTGTGGGGAGAAGGAAATTTTTCAGCAAAAGGCATATTAGAACACTTAAATGTCACCAAGGATTCTACTGATTATCTATGGTATACGACAAGCATTAATATTTCAGAAGCAGACAGTGCATTCTGGTTGGTACACAATAAATATCCATCCCTTGTCATTGATGCTGTGCGTGATGTGGTCCGTATATTTGTCAATGGTCAGATTGCAGGGAGTTCAAGTGGTTATTGGGTCCGAGTGGAGCAACCTCTGAACTTAAGTATAGGGTACAACGAAATAGCTATTCTCTCTGAAATGATTGGATTACAGAACTATGGGGCTTTCCTTGAAAAAGATGGTGGAGGCTTGAGAGGTTCTGTGACATTACAAGGCCTTGTATCAGGAGATAGAAACCTAACAATGGCATGTTGGGGATATCAGGTTGGTTTAAAGGGTGAATATTTGGAAATCTATTCACCTGAACGACAAGATGGTGTGGAATGGTCAGAAATACGAGAAGAGCCTCAAAAGAGTCCTTTCACATGGTACAAGACAGTTTTTGATGCTCCAGATGGTGACAATCCTGTAACACTGGACTTGGGGAGTATGGGAAAGGGTCAAGTTTGGGTTAATGGGAAGAGTTTAGGGAGGTATTGGCCATCCTACCTTGCACCAGATACTGGTTGTAATGCTGTATGTGATTATCGTGGAGCTTATTATGAAGATAAATGTGCAAGCAACTGCGGAAAGCCTACACAACGTTGGTACCATATTCCTCGTGCTTGGCTGCAGGAAATCAATAATCTGTTGGTTGTTTTTGAGGAGAGTGGAGGAAATCCATTGGAAATCTCAGCTGATGTACGTGTCACTCAAACCATATGTGCGGAAGTCTCTCAATCTCATCCTCCGCCGATTCGTGTCTGGTCCGATTTAATCAATTTGACAGCAGGAGGAGGAGGATACGTTAACATGTATGAATTAACAATTCCATCTCCCGAGGTGCACCTGCAATGTGATGATGGACAAGAAATCGTTTCAATCACTTTTGCCAGTTTTGGAAATCCAGAGGGACATTGTGGACAATATGTTCAAGGGACATGCCACGCAGATACCTCACATTCTGTTGTGATCCAAGCATGTCAAGGAAAGAAGAGCTGCTTAATCCCGGTGTCAACAAAGATATTTGGAGGTGATCCATGCCCAGGAACAACCGAGAAAAGGTTAGCAATTGAGGCAAATTGCATGATTGTGTCAACTGCTCCAGACAGTATTGTACAATCATATTGA___TGAGATCTTTTATCATTCTAATTAATTAATTCTGGCTCTTAAAAAGATATGCTTAACACTTGATTGTATCAAGCATTTGCAATCCAACAATGGAGTTTACCTCGCATGTGTGAAAATGTTACAGCAGATAACAAAAATCTCAACTTCAAAGTTTGCGTCTCCATCTACACTGGTAAATAGATATGAAATATCTCCATACACGACAATCTTAATGAGAAAACTTCTAGAAGTGCTCATTAAGGTCAATAATACAGATAGAAGTCTATGCATTGATAGATGTAG

Fln Alignment:

Contig7517___NVSYDHRAVIIDGQRRMLISAGIHYPRATPEMWPHLLSMSKEGGADVIQTYTFWNGHEPVRGQYNFAGRYDLVKFVKLVQNAGLYLHLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTDNMAFKEEMEKYVTMIVNLMKVHKLFSWQGGPIILLQIENEYGNEEHSFGEKGKRYVKWAASMAEGLDAGVPWIMCQQSDAPGNIINSCNGFYCDGFKPNAYHKPTLWTEDWNGWFSAWGGRVPHRPVEDNAFAVARFFQRGGSFHNYYMYFGGTNFGRTAGGPFYTTSYDYDAPIDEYGMLRQPKWGHLKDLHAAIKLCEPALISVDGDPQYIRFGPQQEAHVYKYSGESKVANLTVIRKTGTCAAFLANIDSHSSATVHFNGKVFHLPPWSVSILPDCKNVVFNTAKVGSQTSIVSTKRRPALSQGIFDSEILELGVKVSQLSKVWSEYKEPIGLWGEGNFSAKGILEHLNVTKDSTDYLWYTTSINISEADSAFWLVHNKYPSLVIDAVRDVVRIFVNGQI----AGSSSGYWVRVEQPLNLSIGYNEIAILSEMIGLQNYGAFLEKDGGGLRGSVTLQGLVSGDRNLTMACWGYQVGLKGEYLEIYSPERQDGVEWSEIREEPQKSPFTWYKTVFDAPDGDNPVTLDLGSMGKGQVWVNGKSLGRYWPSYLAPDTGCNAVCDYRGAYYEDKCASNCGKPTQRWYHIPRAWLQEINNLLVVFEESGGNPLEISADVRVTQTICAEVSQSHPPPIRVWSDLINLTAGGGGYVNMYELTIPSPEVHLQCDDGQEIV-SITFASFGNPEGHCGQYVQGTCHADTSHSVVIQACQGKKSCLIPVSTKIFGGDPCPGTTEKRLAIEANC
A9NUR2______________NVTYDHRSLLIDGQRRVLISGSIHYPRSTPEMWPDIIQKAKDGGLDVIESYVFWNMHEPKQNEYYFEDRFDLVKFVKIVQQAGLLVHLRIGPYACAEWNYGGFPVWLHLIPGIHFRTDNEPFKNEMQRFTAKIVDMMKQEKLFASQGGPIILAQIENEYGNIDGPYGAAGKSYVKWAASMAVGLNTGVPWVMCQQADAPDPIINTCNGFYCDAFTPNSPNKPKMWTENWSGWFLSFGGRLPFRPTEDLAFSVARFFQRGGTFQNYYMYHGGTNFGRTTGGPFIATSYDYDAPIDEYGIVRQPKWGHLKELHKAIKLCEAALVNAESN--YTSLGSGLEAHVYSPG-------------SGTCAAFLANSNTQSDATVKFNGNSYHLPAWSVSILPDCKNVVFNTAKIGSQTTSVQMNPANLILAGSNSMKGTD-----SANAASWSWLHEQIGIGGSNTFSKPGLLEQINTTVDSSDYLWYTTSIQVD--DNEPFLHNGTQPVLHVQSLGHALHVFINGEFAGRGAGSSSSSKIALQTPITLKSGKNNIDLLSITVGLQNYGSFFDTWGAGITGPVILQGFKDGEHDLSTQQWTYQIGLTGEQLGIYSGDTKASAQWVAGSDLPTKQPMIWYKTNFDAPSGNDPVALNLLGMGKGVAWVNGQSIGRYWPSYIASQSGCTDSCDYRGAYSSTKCQTNCGQPSQKLYHVPRSWIQPTGNVLVLFEELGGDPTQISFMTRSVGSLCAQVSETHLPPVDSWKS--SATSG-------LEVNKPKAELQLHCPSSRHLIKSIKFASFGTSKGSCGSFTYGHCNTNSTMSIVEEACIGRESCSVEVSIEKF-GDPCKGTV-KNLAVEASC

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
337		28		71	1.0
340	75		25		1.0
659		12	87		0.999964
717		6	60		1.0
719		60	33	6	1.0
720	66			33	1.0
722	6	33	60		1.0
723	33		60	6	1.0
729	64	35			1.0
730		64		35	1.0
763	80	20			0.995493
765	80	20			0.995493
766	80	20			0.995493
768		80		20	0.995493
783	25			75	0.996473
784		25	75		0.996473
804		33	66		0.997452
805	66	33			0.997452
806		33	66		0.997452
807	33		66		0.997452
808	66			33	0.997452
2533		14		85	0.993533
2689		20		80	0.995493
2704			83	16	0.994512
2705	83		16		0.994512
2732		16		83	0.994512
2773		16	83		0.994512
2774		16	83		0.994512
2783		60		40	1.0
2931	75		25		0.996473
2971	75	25			0.996473
3025	33		66		0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
252	264	AATT AATT AATT A	13
610	622	TCC TCC TCC TCC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain