SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7511

Length: 1254 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7511

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	tetratricopeptide repeat domain-containing protein	-	-	2.8026e-45	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	2.8026e-45	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.8026e-45	78%

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
630	16		83		0.994512
639		83	16		0.994512
681		20		80	0.995493
835		33		66	1.0
836			33	66	1.0
838	66	33			1.0
839	66		33		1.0
843	33		66		1.0
856		66	33		1.0
858		33		66	1.0
860		33		66	1.0
861	66			33	1.0
863	33	66			1.0
894	54	18	27		1.0
935		57		42	1.0
938	42		57		1.0
944	57	42			1.0
985		66	33		1.0
989		33		66	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1110	1123	AAAC AAAC AAAC AA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain