SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7493

Length: 627 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7493

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MATE efflux family protein [Arabidopsis thaliana] gb\|AAF82254.1\|AC008051_5 Identical to gene ZF14 from Arabidopsis thaliana gb\|AB028198 and is a member of an uncharacterized integral membrane protein UPF PF\|01554 family dbj\|BAA87939.1\| ZF14 [Arabidopsis t	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	21%
Blast2go	multidrug resistance	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	78%
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	78%
Blast2go	regulation of organ formation	GO:0003156	Biological Process	78%
Blast2go	drug transmembrane transporter activity	GO:0015238	Molecular Function	78%
Blast2go	antiporter activity	GO:0015297	Molecular Function	78%
Blast2go	organelle	GO:0043226	Cellular Component	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S8	IPR000630	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
147		25		75	0.996473
302	85		14		0.993533
304		14	85		0.993533
308		14		85	0.993533
311	71	14		14	0.984337
312		85		14	0.993533
316	85			14	0.993533
318	14			85	0.993533
319		85	14		0.993533
321		14	85		0.993533
322	14		85		0.993533
365		85		14	0.993533
494			66	33	0.997452
541		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain