SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7481

Length: 2064 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene7481
TCTACTCATGGTCTATGGCCATTGTCGCATTACGGTGATGATGTCATCGTGGGCGTGGTGGATACAGGAATATGGCCCGAGAGCAAGAGCTTCAGCGATCATGGCCTAACTACTGCCGCACCCGCGAAATGGAAGGGAGAGTGTGAAGTGGGTTCCGACTTCAATGCGTCCCACTGTAATAAAAAACTCATTGGAGCCCGTTATTTTGTCAAAGGATATGAAGCCCAGTACGGTCGTGTCCACGGAAAGGAAGATTACAGATCTCCTCGAGATGCCGAAGGACATGGTACGCACACTTCCTCTACTGCGGCCGGTTCGGAGGTGCCTGCTTCCAGCTTTCTTGGTTTCGCCGGAGGTACGGCTAGAGGTATGGCTACCAAAGCTCGATTGGCTATCTATAAAGTCTGTTGGGCTCTTGACTGCGTAACCTCAGATGTGCTTGCGGGAATGGAGGCGGCTGTTTCGGACGGAGTCGACATGCTATCCATATCGCTCGGCATCGTTAGTGACGCCGCTTATTATGATGATATTATGGCAATTGGAGCTCTGGGAGCAACTGAGAAGGGTGTTTTTGTCTCGTGTTCGGCCGGTAATTCAGGGCCTTATGAGATTTTCAACACGGCGCCATGGATAACCACCGTAGGCGCCAGCACCATCGACAGAGAGTTCCCGGCTCCCGTCGTCCTTGGCAACGGCAAAAGCTACATGGGCTTCGCCCTCAACAAAGACTTGTCTCTGGCTAACGAGCAATTGCCTTTGGTATACGGGAAAACCGCATCGAGTAACATATATGCAAATCTCTGCATTAATGGAAGCCTTCATCCTGATATGGTCCGTGGAAAAATTGTACTCTGTGATCTTGGACGAGACGGAACTATAGAAAAAGGACAGGTCGTGCGGCGAGCCGGCGGTGCTGGGATGATTCTAGTTAATCGGAATGAAGATGGAGACTATTCGCCGACCAGTCATAATCTGTTCCCGGCGACCATGGTGGGTCCCAAGGCCGGGGAATACATAAAAGCTTATATAAACACGAGTACAAATCCTATGGCAACTATTAAATTGGAGGGACTAACTGTAATTGGTAAAGCACGAGCTCCGGTCGTAACAGCATTTTCGTCCAGAGGGCCGAATACCGTCGTTCCGGAGATCCTTAAACCGGACCTGATTGCTCCGGGAGTCAACATATTGGCGGCGTGGACAGGGCACGCGGGGCCAACGTACTCCGACAAGGAAAGAGTAGATTTCAATATAATCTCTGGGACTTCGATGTCTTGCCCTCATGTGACCGGCCTCGCGGCGCTTATACGCGGTGCTCATCCGGCATGGACACCCGCTGCAATAAAATCGGCTCTCATGACATCTTCGGTGCTATTCGACAACCGCAAAAGCCCTATAAGCGACTCATTCACCGCTTTACCGGCAAACGCCTTTGCAATGGGCGCGGGTCATGTGAATCCCAATGCTGCCTTGGATCCCGGTCTCCTCTATGATCTTGGAATGGACGACTACGTTAACTTTCTGTGTACCCTAAATTACACAGCAAAGCAAATTCATATTCTGACGAGGCAGGCAACATCCTGCCCCAAATTACGGTCCGCGCCGGGAGATCTGAACTACCCATCATTCTCGGTGGTGTTTAAGCCGCGTAGTTTGGTTCGTGTTACGAGGAGAACCGTGACGAACGTTGGAGGAGCACCGTGTGTATATGAAATGGCAGTCGAGAGCCCTGAAAACGTAAATATAACCGTGCAGCCAACGACGCTCGCCTTCGAAAAGCAAAACCAGAAGGCGACTTATACGGTGACATTTGAAAGCAAAATTGCAGCTGACCACAAACCTAAAGGACGCCAAGCCTTAGGTCAAATATTGTGGAAATGCGTGAAGGGCGGAACGCAAGTTGTTCGCAGTCCCGTCGCTATAGCCTGGACGGTGGAGTGATGAAGAATGAGTGGACTGGCCCAGTTGTTCGTCTGTGGGCCTCTAGTTTGAGTGGACTGGCCCAGTTGTTCGTCTGTGGGCCTCTAGTTTGAATAAAAGTAGAAGCCATCCATGAAGATGTAA

Ace file of the UniGene sp_v2.0_unigene7481

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Subtilisin-like protease n=2 Tax=Nicotiana tabacum RepID=A9XG40_TOBAC	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	subtilisin-like protease	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	mucilage metabolic process involved seed coat development	GO:0048359	Biological Process	68%
Blast2go	mucilage extrusion from seed coat	GO:0080001	Biological Process	68%
Blast2go	proteolysis	GO:0006508	Biological Process	68%
Blast2go	negative regulation of catalytic activity	GO:0043086	Biological Process	68%
Blast2go	identical protein binding	GO:0042802	Molecular Function	68%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	68%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	68%
Blast2go	apoplast	GO:0048046	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Phosphofructokinase domain	IPR000023	-	-
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3		IPR000991	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	GMP synthase, C-terminal	IPR001674	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	GMP synthase, N-terminal	IPR004739	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR011702	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peroxisome membrane protein, Pex16	IPR013919	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-
Sma3		IPR018318	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQQ7

Fln msg: your sequence is shorter than subject: 647 - 772

Fln protein: STHGLWPLSHYGDDVIVGVVDTGIWPESKSFSDHGLTTAAPAKWKGECEVGSDFNASHCNKKLIGARYFVKGYEAQYGRVHGKEDYRSPRDAEGHGTHTSSTAAGSEVPASSFLGFAGGTARGMATKARLAIYKVCWALDCVTSDVLAGMEAAVSDGVDMLSISLGIVSDAAYYDDIMAIGALGATEKGVFVSCSAGNSGPYEIFNTAPWITTVGASTIDREFPAPVVLGNGKSYMGFALNKDLSLANEQLPLVYGKTASSNIYANLCINGSLHPDMVRGKIVLCDLGRDGTIEKGQVVRRAGGAGMILVNRNEDGDYSPTSHNLFPATMVGPKAGEYIKAYINTSTNPMATIKLEGLTVIGKARAPVVTAFSSRGPNTVVPEILKPDLIAPGVNILAAWTGHAGPTYSDKERVDFNIISGTSMSCPHVTGLAALIRGAHPAWTPAAIKSALMTSSVLFDNRKSPISDSFTALPANAFAMGAGHVNPNAALDPGLLYDLGMDDYVNFLCTLNYTAKQIHILTRQATSCPKLRSAPGDLNYPSFSVVFKPRSLVRVTRRTVTNVGGAPCVYEMAVESPENVNITVQPTTLAFEKQNQKATYTVTFESKIAADHKPKGRQALGQILWKCVKGGTQVVRSPVAIAWTVE*

Protein Length: 648

Fln nts: TCTACTCATGGTCTATGGCCATTGTCGCATTACGGTGATGATGTCATCGTGGGCGTGGTGGATACAGGAATATGGCCCGAGAGCAAGAGCTTCAGCGATCATGGCCTAACTACTGCCGCACCCGCGAAATGGAAGGGAGAGTGTGAAGTGGGTTCCGACTTCAATGCGTCCCACTGTAATAAAAAACTCATTGGAGCCCGTTATTTTGTCAAAGGATATGAAGCCCAGTACGGTCGTGTCCACGGAAAGGAAGATTACAGATCTCCTCGAGATGCCGAAGGACATGGTACGCACACTTCCTCTACTGCGGCCGGTTCGGAGGTGCCTGCTTCCAGCTTTCTTGGTTTCGCCGGAGGTACGGCTAGAGGTATGGCTACCAAAGCTCGATTGGCTATCTATAAAGTCTGTTGGGCTCTTGACTGCGTAACCTCAGATGTGCTTGCGGGAATGGAGGCGGCTGTTTCGGACGGAGTCGACATGCTATCCATATCGCTCGGCATCGTTAGTGACGCCGCTTATTATGATGATATTATGGCAATTGGAGCTCTGGGAGCAACTGAGAAGGGTGTTTTTGTCTCGTGTTCGGCCGGTAATTCAGGGCCTTATGAGATTTTCAACACGGCGCCATGGATAACCACCGTAGGCGCCAGCACCATCGACAGAGAGTTCCCGGCTCCCGTCGTCCTTGGCAACGGCAAAAGCTACATGGGCTTCGCCCTCAACAAAGACTTGTCTCTGGCTAACGAGCAATTGCCTTTGGTATACGGGAAAACCGCATCGAGTAACATATATGCAAATCTCTGCATTAATGGAAGCCTTCATCCTGATATGGTCCGTGGAAAAATTGTACTCTGTGATCTTGGACGAGACGGAACTATAGAAAAAGGACAGGTCGTGCGGCGAGCCGGCGGTGCTGGGATGATTCTAGTTAATCGGAATGAAGATGGAGACTATTCGCCGACCAGTCATAATCTGTTCCCGGCGACCATGGTGGGTCCCAAGGCCGGGGAATACATAAAAGCTTATATAAACACGAGTACAAATCCTATGGCAACTATTAAATTGGAGGGaCTAACTGTAATTGGTAAAGCACGAGCTCCGGTCGTAACAGCATTTTCGTCCAGAGGGCCGAATACCGTCGTTCCGGAGATCCTTAAACCGGACCTGATTGCTCCGGGAGTCAACATATTGGCGGCGTGGACAGGGCACGCGGGGCCAACGTACTCCGACAAGGAAAGAGTAGATTTCAATATAATCTCTGGGACTTCGATGTCTTGCCCTCATGTGACCGGCCTCGCGGCGCTTATACGCGGTGCTCATCCGGCATGGACACCCGCTGCAATAAAATCGGCTCTCATGACATCTTCGGTGCTATTCGACAACCGCAAAAGCCCTATAAGCGACTCATTCACCGCTTTACCGGCAAACGCCTTTGCAATGGGCGCGGGTCATGTGAATCCCAATGCTGCCTTGGATCCCGGTCTCCTCTATGATCTTGGAATGGACGACTACGTTAACTTTCTGTGTACCCTAAATTACACAGCAAAGCAAATTCATATTCTGACGAGGCAGGCAACATCCTGCCCCAAATTACGGTCCGCGCCGGGAGATCTGAACTACCCATCATTCTCGGTGGTGTTTAAGCCGCGTAGTTTGGTTCGTGTTACGAGGAGAACCGTGACGAACGTTGGAGGAGCACCGTGTGTATATGAAATGGCAGTCGAGAGCCCTGAAAACGTAAATATAACCGTGCAGCCAACGACGCTCGCCTTCGAAAAGCAAAACCAGAAGGCGACTTATACGGTGACATTTGAAAGCAAAATTGCAGCTGACCACAAACCTAAAGGACGCCAAGCCTTAGGTCAAATATTGTGGAAATGCGTGAAGGGCGGAACGCAAGTTGTTCGCAGTCCCGTCGCTATAGCCTGGACGGTGGAGTGA___TGAAGAATGAGTGGACTGGCCCAGTTGTTCGTCTGTGGGCCTCTAGTTTGAGTGGACTGGCCCAGTTGTTCGTCTGTGGGCCTCTAGTTTGAATAAAAGTAGAAGCCATCCATGAAGATGTAA

Fln Alignment:

Contig7481___STHGLWPLSHYXXXXXXXXXXXXXWPESKSFSDHGLTTAAPAKWKGECEVGSDFNASHCNKKLIGARYFVKGYEAQYGRVHGKEDYRSPRDAEGHGTHTSSTAAGSEVPASSFLGFAGGTARGMATKARLAIYKVCWALDCVTSDVLAGMEAAVSDGVDMLSISLGIVSDAAYYDDIMAIGALGATEKGVFVSCSAGNSGPYEIFNTAPWITTVGASTIDREFPAPVVLGNGKSYMGFALNKDLSLANEQLPLVYGKTASSNIYANLCINGSLHPDMVRGKIVLCDLGRDGTIEKGQVVRRAGGAGMILVNRNEDGDYSPTSHNLFPATMVGPKAGEYIKAYINTSTNPMATIKLEGLTVIGKARAPVVTAFSSRGPNTVVPEILKPDLIAPGVNILAAWTGHAGPT--YSDKERVDFNIISGTSMSCPHVTGLAALIRGAHPAWTPAAIKSALMTSSVLFDNRKSPISDSFTALPANAFAMGAGHVNPNAALDPGLLYDLGMDDYVNFLCTLNYTAKQIHILTRQATSCPKLRSAPGDLNYPSFSVVFKPRSLXXXXXXXXXNVGGAPCVYEMAVESPENVNITVQPTTLAFEKQNQKATYTVTFESKIAADHKPKGRQALGQILWKCVKGGTQVVRSPVAIAW
B8LQQ7______________SIDGLWPQSHYGEDVIVGLLDTGVWPESKSFSDEGLTSRVPAKWKGECEVGSDFNASHCNNKLIGARYFVKGYEAMYGRIDKKEDYRSPRDADGHGTHTSSTAAGSEVPGASLFGFARGTARGIATKARLAVYKVCWAVTCVNSDVLAGMEAAVADGVDLLSLSLGIVDDVPYYHDTIAIGALGAIEKGVFVSCSAGNAGPYAIFNTAPWITTVGASTIDREFPAPVVLGNGKSYMGSSLDKDKTLAKEQLPLVYGKTASSKQYANFCIDGSLDPDMVRGKIVLCDLEEGGRIEKGLVVRRAGGAGMILASQFKEEDYSATYSNLLPATMVDLKAGEYIKAYMNTTRNPLATIKTEGLTVIGKARAPVVIAFSSRGPNRVAPEILKPDLVAPGVNILAAWTGHTSPTGLISDKRRVDFNIISGTSMSCPHVAGIAALIRSAHPAWTPAAIKSALMTSSALFDNRKSPISDSITALPADALAMGAGHVNPNAALDPGLVYDLGIDDYVSFLCSLNYTAKHIQILTKNATSCPKLRSRPGDLNYPSFSVVFKPRSLVRVTRRTVTNVGGAPSVYEMAVESPENVNVIVEPRTLAFTKQNEKATYTVRFESKIASDNKSKRHRGFGQILWKCVKGGTQVVRSPVAIAW

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
684		75	25		0.996473
730		25		75	0.996473
741		25		75	0.996473
777	83	16			0.994512
786		83	16		0.994512
788	16			83	0.994512
799		83		16	0.994512
801		83	16		0.994512
825		16		83	0.994512
866	20		80		0.995493
869	80			20	0.995493
1071			75	25	0.996473
1192			60	40	1.0
1315	10		90		0.90298
1322		90		10	0.90298
1409		10		90	0.90298
1489		14		85	0.993533
1501	85		14		0.993533
1536			14	85	0.993533
1596		83	16		0.994512
1614		83	16		0.994512
1654	16			83	0.994512
1655			16	83	0.994512
1656			83	16	0.994512
1657		16	83		0.994512
1659	16			83	0.994512
1662		16		83	0.994512
1728	37	62			1.0
1770		71		28	1.0
1803	30		70		1.0
1860	25	37		37	1.0
1914		69		30	1.0
1917		69	30		1.0
1920		30		69	1.0
1932	28		71		1.0
1993	25		75		0.996473
1996	25		75		0.996473
1997	25		75		0.996473
1999		75	25		0.996473
2003	25		75		0.996473
2004		75		25	0.996473
2005		75	25		0.996473
2006	25	75			0.996473
2009	25			75	0.996473
2014	25			75	0.996473
2019	33			66	0.997452
2020			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain