SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7418

Length: 1909 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7418 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BTB/POZ and M2 domain-containing protein [Arabidopsis thaliana] sp\|Q9M8J9.1\|BPM2_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 2; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 2; Short=AtBPM2 gb\|AAF30312.1\|AC018907_12 unknown protein [Ara	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	btb poz and math domain-containing protein 2-like	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to salt stress	GO:0071472	Biological Process	83%
Blast2go	cellular response to water deprivation	GO:0042631	Biological Process	83%
Blast2go	protein binding	GO:0005515	Molecular Function	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3	MATH	IPR002083	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUQ7

Fln msg:

Fln protein: MAVATKRASSRGIMITTAGGAAVAPSSSSLSCPSRPTSAPSTSTSITDTVNGSHHFTINGYTLSKGMGVGKYIASETFVVGGYEWAIYFYPDGKSPEDNSVYVSLFIALASEGTDVRALFELTLLDQSGNEKHKTHTHFDRMLESGPYTLKYRGSMWGYKRFFRRAALETSDYIKDDCLSIKCTVGVVGSRTEGPKIYTIPVPESNLGQDFGELLDTGKGADVSFEVDGTIFWAHKLVLAARSPVFKAQLFGPMKDQNTVNIKVEDMEAPVFKAMVHFIYRDTLPCFADLIGSTSPVASTLMAQHLLVAADRYGLDRLRLLSEAKLCDEISIDTVATTLALAEQHQCFQLKSVCLKFIACPGRLKAVMQSEGFDYLNESCSSVLSELLESFARVEKNSGMVRQRYEDGSDSNGRRVRQRT*

Protein Length: 422

Fln nts: ATGGGGTTGGATGTTTGTTTGGGACAAGTAACGTGGGATTTAAAAGCTCTCCCTCCGAAAGGACGAGTAATCAGATACAGACTGCTGTTAACCAAAGATTCACAGGAGATATCCTCGGACATTAAACCCCAAACAAAGAGACAACACAGCAA_-_ATGGCCGTGGCCACCAAGCGAGCGAGTAGCAGGGGGATTATGATAACAACGGCAGGGGGAGCTGCAGTGGCGCCCTCGTCTTCTTCCCTTTCCTGCCCATCTCGCCCAACTTCCGCGCCGTCGACTTCTACGTCAATTACTGACACCGTCAATGGCTCCCATCACTTCACAATTAACGGTTACACCCTCTCCAAGGGAATGGGAGTCGGGAAATACATCGCCAGTGAAACCTTCGTCGTCGGGGGTTACGAATGGGCCATCTACTTCTATCCCGACGGCAAGAGCCCTGAGGATAATTCGGTCTATGTCTCACTCTTCATAGCCCTGGCCAGTGAGGGCACGGATGTTAGAGCCCTGTTCGAATTGACCCTGCTGGATCAGAGCGGAAATGAAAAGCACAAAACCCATACGCACTTCGATCGGATGCTCGAGAGCGGGCCTTATACGTTGAAATACCGAGGGAGCATGTGGGGCTATAAACGATTCTTCAGAAGAGCTGCACTTGAAACTTCAGATTATATCAAAGATGATTGCCTTTCCATAAAATGCACTGTTGGGGTTGTTGGCTCACGTACAGAGGGGCCAAAAATTTACACCATTCCAGTGCCAGAGTCAAATCTTGGTCAGGATTTTGGTGAACTTTTGGATACTGGAAAGGGTGCAGATGTTAGTTTTGAAGTTGATGGGACAATTTTCTGGGCTCACAAATTGGTGCTTGCTGCTCGCTCACCTGTCTTCAAGGCCCAGCTTTTTGGCCCAATGAAGGATCAGAATACTGTTAATATAAAGGTGGAAGATATGGAAGCGCCAGTATTTAAGGCAATGGTCCATTTCATATATCGAGATACCCTTCCTTGTTTTGCTGACCTGATTGGATCAACTTCACCAGTTGCTTCGACCCTGATGGCCCAACATTTGCTTGTTGCAGCAGATCGGTATGGGTTGGATAGACTCAGGTTACTGTCAGAAGCAAAGTTATGTGACGAAATTAGCATAGACACAGTTGCAACTACTTTAGCACTTGCAGAGCAGCATCAGTGTTTCCAGCTTAAATCAGTTTGTCTCAAATTCATTGCATGTCCTGGGCGACTGAAAGCTGTCATGCAATCTGAGGGATTCGATTATTTGAACGAAAGTTGCTCCTCTGTTCTATCTGAGCTTTTGGAAAGCTTTGCGAGAGTCGAGAAAAATTCAGGCATGGTTAGACAACGATATGAAGATGGGAGTGATTCCAATGGGAGAAGGGTTAGGCAGAGAACATAG___TTTTCTAATTCATAGAGGAATTTGTCTCACTAAATATGAGATTGAGTGCCTCGGCCAATGACAAAATATGAAACTTCTTTTTGAACTTCATAATGAGCCTTTGATCACGCTTGATACTTAGATTTGATGCTTTATTAAAAGTTAAATTCATGTTGACTCTGGTTTGGAAGTCCGTTCTCTCTGTGTTTTGGGCCATTGCCCATGTTTGGTCCTAAAGTCATAAAACACTAATTTCATTCTTTTTCATTTTCATAAATGTGTTTATGAGGTTTACTATTCAGTGCAGTCAATGACTGGGGCTACGGTTCTGAACAATTTCATACGTTCTCTGCTTTGCTTCTGCAAATTATGCGCCAATAGTAAAGTACAGTCTTTGTTTTCTTGCATAACATTTGGACAAACTATAATAGTGGCTAGGTGCTCTGGTTGTTTTGACAGACATTTTGTTCTCAGGCTACTCCACATGTCCATGAAATAGAATTACTGGGTTTGCG

Fln Alignment:

Contig7418___VNGSHHFTINGYTLSKGMGVGKYIASETFVVGGYEWAIYFYPDGKSPEDNSVYVSLFIALASEGTDVRALFELTLLDQSGNEKHKTHTHFDRMLESGPYTLKYRGSMWGYKRFFRRAALETSDYIKDDCLSIKCTVGVVGSRTEGPKIYTIPVPESNLGQDFGELLDTGKGADVSFEVDGTIFWAHKLVLAARSPVFKAQLFGPMKDQNTVNIKVEDMEAPVFKAMVHFIYRDTL----PCFADLIGSTSPVASTLMAQHLLVAADRYGLDRLRLLSEAKLCDEISIDTVATTLALAEQHQCFQLKSVCLKFIACPGRLKAVMQSEGFDYLNXXXXXXXXXXXXSFARVE---KNSGMVRQ---RYEDGSDSNGRRVRQRT
A9NUQ7______________VNGSHNFVIQGYSLAKGMGVGRHIASETFTVGGYQWAIYFYPDGKNAEDNSLYVSVFIALASEGTDVRALFELTLVDQSGKGKNKVHSHFDRALESGPYTLKYRGSMWGYKRFFRRAVLETSDYLKDDCLKLNCTVGVVVSATESPMLHSISVPESDLGLHFGALLENQEASDVTFDVAGEKFHAHKLVLAARSPVFKAKFFDSSEQSN--EVVITDMEPTVFKAMLHYIYRDTLPDEEPSSPNSSSSSSSSTTETLTERLLAVAQLYGLRRLRLLCESKLCRSISVNTVASTLALAESHHATDLKATCLKFAA--ENLAGVMRSKGFEYLKEKCPLLQSELLKTVAHFEDDCSSGGKTRSVWAQLSDGTDINGRRVRPRT

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
245	83		16		0.994512
325		83		16	0.994512
335	85			14	0.993533
341	85		14		0.993533
345		14		85	0.993533
346		14	85		0.993533
349			14	85	0.993533
350			16	83	0.994512
352	83	16			0.994512
355			16	83	0.994512
356	16			83	0.994512
357		16		83	0.994512
358			16	83	0.994512
429	11			77	0.968132
497	90		10		0.90298
498	10			90	0.90298
502		90	10		0.90298
503	10			90	0.90298
505	10			90	0.90298
812		90	3		0.997952
1289	87		12		0.992554
1294		87		12	0.992554
1297		87		12	0.992554
1298		87	12		0.992554
1299	12			87	0.992554
1300	12	87			0.992554
1303	12			87	0.992554
1305			12	87	0.992554
1510		10		90	0.90298
1611	7		92		0.999532
1612		7	92		0.999532
1613	7			92	0.999532
1614			92	7	0.999532
1687	7		92		0.999602
1762	5	10		84	0.999846
1763	11		83	5	0.999887
1764		11		88	0.999937
1816		12		87	0.999964
1842	64	14		7	0.999978
1844	7	21		71	1.0
1846	21		71	7	1.0
1848	18	72	9		0.999994
1849	9	72	18		0.999994
1851	9		18	72	0.999994
1852	18		9	72	0.999994
1855	9	18	72		0.999994
1857	18		81		0.999994
1860	81			18	0.999994
1861		20	80		0.999996
1867			22	77	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain