SustainPineDB

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Assembly info
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GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7414

Length: 313 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene7414
ACAAGGGGAAGATCCTCCAGTGGGATGTTGTCAACGAGATCTTCGCTGAGGACGGTAACCTCCGCGACAGTGTCTTCAGCCGAGTTCTCGGTGAGGACTTTGTTGGAATTGCTTTCCGCGCTGCCCGCGCCGCTGATCCCAACGCCAAGCTCTACATCAACGACTATAACCTCGACATTGCTAACTACGCTAAGGTGACCAACGGCATGGTCGCTCACGTCAACAAGTGGTTGGCTGCTGGCATTCCCATCGATGGCATTGGTTCTCAGGGCCATCTTGCTGCTCCTGGTGGCTGGAACCCAGCCTCTGGCGT

Ace file of the UniGene sp_v2.0_unigene7414 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative endoglucanase type F n=2 Tax=Fusarium oxysporum RepID=GUNF_FUSOX	-	-	2.00386e-43	85%
FL-Next	tr=Endo-1,4-beta-xylanase, family GH10; Ectocarpus siliculosus (Brown alga).	-	-	0.0	37%
Blast2go	endo- -beta-xylanase	-	-	0.0	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulase.	EC:3.2.1.4	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	88%
Blast2go	Endo-1,4-beta-xylanase.	EC:3.2.1.8	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	interaction with host via protein secreted by type II secretion system	GO:0052051	Biological Process	88%
Blast2go	cellulose catabolic process	GO:0030245	Biological Process	88%
Blast2go	xylan catabolic process	GO:0045493	Biological Process	88%
Blast2go	cellulase activity	GO:0008810	Molecular Function	88%
Blast2go	cation binding	GO:0043169	Molecular Function	88%
Blast2go	cellulose binding	GO:0030248	Molecular Function	88%
Blast2go	endo-1,4-beta-xylanase activity	GO:0031176	Molecular Function	88%
Blast2go	extracellular region	GO:0005576	Cellular Component	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8LGR5

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 103 - 344

Fln protein: KGKILQWDVVNEIFAEDGNLRDSVFSRVLGEDFVGIAFRAARAADPNAKLYINDYNLDIANYAKVTNGMVAHVNKWLAAGIPIDGIGSQGHLAAPGGWNPASG

Protein Length: 104

Fln nts: ACAAGGGGAAGATCCTCCAGTGGGATGTTGTCAACGAGATCTTCGCTGAGGACGGTAACCTCCGCGACAGTGTCTTCAGCCGAGTTCTCGGTGAGGACTTTGTTGGAATTGCTTTCCGCGCTGCCCGCGCCGCTGATCCCAACGCCAAGCTCTACATCAACGACTATAACCTCGACATTGCTAACTACGCTAAGGTGACCAACGGCATGGTCGCTCACGTCAACAAGTGGTTGGCTGCTGGCATTCCCATCGATGGCATTGGTTCTCAGGGCCATCTTGCTGCTCCTGGTGGCTGGAACCCAGCCTCTGGCGT

Fln Alignment:

Contig7414___GKILQWDVVNEIFAED--GNLRDSVFSRVLGEDFVGIXXXXXXXADPNAKLYINDYNLDIANY----AKVTNGMVAHVNKWLAAGIPIDGIGSQGHLAAPG
D8LGR5______________GRVSSWDVVNEALCQDCSGRMEDNVFLRKLGPGYVDDCFRVAHQIDPNAKLIYNDNKGEGAGLPGGRSRKADAMYDMLKGMKERGVPVHGAGLQGHFTAAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain