SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7343

Length: 2544 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene7343
CGTCGTGACCTTGGCTGTCACTCAATCGTCGTGACGTTGTCTGTCACTGTGGGGTTGAGTCTTGCCGGGAACGGAAGTTACAGAGAGCTTTTGGATACTTTTCTGAAGCAAAAGTGCAGAAGAAAAGGCGATTTCATGGCGGACGCTCCAAGGGTTGATAGACTTGGCGGTATCGATCTGTCAGTCAAGCTTGAAGAGACGGAGAATGAGGAGAAATTGATGACCGACAGAGAGTCTGAAAATGAGATTAAAAATGGCGTGGTGGATTTCTTCTCTGAGAAGGCTGTTCGAGGTCTGGGCTTCGAATTCCGGCCCTCACCTGGCGATGGAGCGCCCTCTGTGGCTAGTCTTGGCGAGGGGTTGCGTCTCGGTTCGCAGAAAACTGAGAACAAAGAAGAAGGGCCCTCCTCCTCCTCCTCCAAGGGATTTAACCTTTCGCTATTGCCTGCCAACACGGGAAGCGATCGTTCAACTGTGGAAGACGGGATGTCACCTGTTCGTTCGCAGGAGCCTTCCAATCCGGATGAAGGGGAACCCAAGAGCGAGTTGATGATGTTACAGGTGGAGCTCAACCGTATGAACGAAGAAAACCAGAGGCTAAGACTCATGTTGAACTACGTAAGCAAGAACTACGGTAATCTGCAGATGCACCTTATGTCCGTTATGCAGCAACAACCTCCGCCAGAGAAGGTGGAAGAGAAATTGAATGGATCGTCGGAGGGAGTGAAGGTGGATGTAGCCGGCCCCGTGCAACGACAGTTTTTGGATCTCGTACCCATCTCGAGCCACGGGACCGATTCCCAACATTCTCTCTCCTCCGATACCCAGGATGCCGACGAGGTTGAAGAGACCGCTAAGTCCATTAACAATGAAGTCCTCTCAAAGAAACGCGACGTGGCCACCGTTAATTCCACGGATAAGCCACGTACTTGTGATGTCCGAGTCCAACAACAACAACAACGACCTGGTAACGATCCTGCTGCTAATTCGCCTACTGCTTTGAACGCCCAAGAAAAGGGCCACCCCGATAGCCCCGATCATGAGTCCTGGACTGCTAACAAAGCGCAGAAAGTGGCCAATAAGTGCGCTGTTGATCAAACCGAAGCCACCATCAGAAAAGCCAGAGTTTCAGTCCGGGCCAGATCCGAGGCTCCCATGATAAGCGATGGGTGCCAATGGAGAAAATACGGGCAGAAGATGGCAAAGGGCAATCCATGCCCGAGAGCGTACTACCGATGCACTATGGCTGTTGGATGCCCCGTTCGCAAACAGGTTCAGAGGTGCGCCGAGGACAGGTCAGTTCTGGTAACAACATACGAGGGAAGTCATAATCACCCGCTACCGCCTGCAGCTACAGCCATGGCATCAACCACGTCAGCAGCTGCCTGCATGCTTCTTTCAGGCTCTACAACAAGCAACGACGGAGGCTTCAATTCGAGTTTCATGCAGGCCGCCGCAGGAAGCCTAATGTCGTGCTCACCCGCCTCCATGGCCACCATCTCTGCCTCCGCTCCATTTCCTACTGTCACGCTCGACCTAACGCAAAACCCTAACCCTAATATGTATCATCGACAGCCCTCCGGCTTCCCCATGCCCCTCGGAGGTTTCCCACAACTACCCTCACACCCACCTCAGATCTTCTCTCACTCCCTCTTCAATACTTCCAAATTCGCTCCCCTTAGCGGTCAGCAGTTCGATCCGCAGCAACAGCAGGTACCCCACTTTTCAGGTCACCCGATGCAGCAGCAGACTCATATGCCGGTGCCCATTTCTCAATACAAAGCACCACAATCGTCTCTAATGGACACTGTTAGTGCAATTACAGCAGATCCCAACTTCACTGCCGCCCTTGCAGCTGCCATCACGTCAATAATTAGCGGCCAGTCCAACAACGCCAACACTATTCCATCGCCGGCTCCTCCCTGTGCCAGGGCTGATAATCCTGCTTCGGCTAAATTGCTCCACTGATTCTTAGACCGTAATTTATCTTCTGCCATGGAGGACCAATCTTTTTGCAGAGGGACTCAAATTCTTTGCAGATGTAACACTTGTGTCTGTCTACGGAGACGGTCATTCGGTGGAGTAACATGATTTGTTGAGATGTCATTACAAGTGCAGGAATAGCCAATTTGGGGTACATGTTGTGTTGATAGTCATCAGTATAGAACAGAGGCCAAACATTCTTTCATACACAGGGTTTTCTCCAGAGTTTGTATCTGGTTGGAACACAGCTAATATATACATCACTTTTCAAAGAAGAATAAGGAGAGAGATACTGGCTTTGTGAATAGACGTGTCACATCACATTTCATGACTACATTCTTTTCAGCTGTATCCCACTTGAACTTGAGGTCGCAGGCCTATCCTGAAATACCACTACAACACGGCTTGGCTGCCATTACTTGAAATGACAAAGGTTATTGTGAATATGCTAGGAGATCACTTTTACCTTCAGATCCAGAGCTATATAATTTGCTATTTTTGCATAATTTATTTGTTTAGAGGTTTACAAAATGTATGGTCAGACATAGCGGTAATCATCAA

Ace file of the UniGene sp_v2.0_unigene7343

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RXH5_RICCO	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	48%
Blast2go	wrky transcription factor 6-like	-	-	58%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6H7H0

Fln msg: your sequence is longer than subject: 611 - 535

Fln protein: MADAPRVDRLGGIDLSVKLEETENEEKLMTDRESENEIKNGVVDFFSEKAVRGLGFEFRPSPGDGAPSVASLGEGLRLGSQKTENKEEGPSSSSSKGFNLSLLPANTGSDRSTVEDGMSPVRSQEPSNPDEGEPKSELMMLQVELNRMNEENQRLRLMLNYVSKNYGNLQMHLMSVMQQQPPPEKVEEKLNGSSEGVKVDVAGPVQRQFLDLVPISSHGTDSQHSLSSDTQDADEVEETAKSINNEVLSKKRDVATVNSTDKPRTCDVRVQQQQQRPGNDPAANSPTALNAQEKGHPDSPDHESWTANKAQKVANKCAVDQTEATIRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSVLVTTYEGSHNHPLPPAATAMASTTSAAACMLLSGSTTSNDGGFNSSFMQAAAGSLMSCSPASMATISASAPFPTVTLDLTQNPNPNMYHRQPSGFPMPLGGFPQLPSHPPQIFSHSLFNTSKFAPLSGQQFDPQQQQVPHFSGHPMQQQTHMPVPISQYKAPQSSLMDTVSAITADPNFTAALAAAITSIISGQSNNANTIPSPAPPCARADNPASAKLLH*

Protein Length: 612

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGTCGTGACGTTGTCTGTCACTGTGGGGTTGAGTCTTGCCGGGAACGGAAGTTACAGAGAGCTTTTGGATACTTTTCTGAAGCAAAAGTGCAGAAGAAAAGGCGATTTC_-_ATGGCGGACGCTCCAAGGGTTGATAGACTTGGCGGTATCGATCTGTCAGTCAAGCTTGAAGAGACGGAGAATGAGGAGAAATTGATGACCGACAGAGAGTCTGAAAATGAGATTAAAAATGGCGTGGTGGATTTCTTCTCTGAGAAGGCTGTTCGAGGTCTGGGCTTCGAATTCCGGCCCTCACCTGGCGATGGAGCGCCCTCTGTGGCTAGTCTTGGCGAGGGGTTGCGTCTCGGTTCGCAGAAAACTGAGAACAAAGAAGAAGGGCCCTCCTCCTCCTCCTCCAAGGGATTTAACCTTTCGCTATTGCCTGCCAACACGGGAAGCGATCGTTCAACTGTGGAAGACGGGATGTCACCTGTTCGTTCGCAGGAGCCTTCCAATCCGGATGAAGGGGAACCCAAGAGCGAGTTGATGATGTTACAGGTGGAGCTCAACCGTATGAACGAAGAAAACCAGAGGCTAAGACTCATGTTGAACTACGTAAGCAAGAACTACGGTAATCTGCAGATGCACCTTATGTCCGTTATGCAGCAACAACCTCCGCCAGAGAAGGTGGAAGAGAAATTGAATGGATCGTCGGAGGGAGTGAAGGTGGATGTAGCCGGCCCCGTGCAACGACAGTTTTTGGATCTCGTACCCATCTCGAGCCACGGGACCGATTCCCAACATTCTCTCTCCTCCGATACCCAGGATGCCGACGAGGTTGAAGAGACCGCTAAGTCCATTAACAATGAAGTCCTCTCAAAGAAACGCGACGTGGCCACCGTTAATTCCACGGATAAGCCACGTACTTGTGATGTCCGAGTCCAACAACAACAACAACGACCTGGTAACGATCCTGCTGCTAATTCGCCTACTGCTTTGAACGCCCAAGAAAAGGGCCACCCCGATAGCCCCGATCATGAGTCCTGGACTGCTAACAAAGCGCAGAAAGTGGCCAATAAGTGCGCTGTTGATCAAACCGAAGCCACCATCAGAAAAGCCAGAGTTTCAGTCCGGGCCAGATCCGAGGCTCCCATGATAAGCGATGGGTGCCAATGGAGAAAATACGGGCAGAAGATGGCAAAGGGCAATCCATGCCCGAGAGCGTACTACCGATGCACTATGGCTGTTGGATGCCCCGTTCGCAAACAGGTTCAGAGGTGCGCCGAGGACAGGTCAGTTCTGGTAACAACATACGAGGGAAGTCATAATCACCCGCTACCGCCTGCAGCTACAGCCATGGCATCAACCACGTCAGCAGCTGCCTGCATGCTTCTTTCAGGCTCTACAACAAGCAACGACGGAGGCTTCAATTCGAGTTTCATGCAGGCCGCCGCAGGAAGCCTAATGTCGTGCTCACCCGCCTCCATGGCCACCATCTCTGCCTCCGCTCCATTTCCTACTGTCACGCTCGACCTAACGCAAAACCCTAACCCTAATATGTATCATCGACAGCCCTCCGGCTTCCCCATGCCCCTCGGAGGTTTCCCACAACTACCCTCACACCCACCTCAGATCTTCTCTCACTCCCTCTTCAATACTTCCAAATTCGCTCCCCTTAGCGGTCAGCAGTTCGATCCGCAGCAACAGCAGGTACCCCACTTTTCAGGTCACCCGATGCAGCAGCAGACTCATATGCCGGTGCCCATTTCTCAATACAAAGCACCACAATCGTCTCTAATGGACACTGTTAGTGCAATTACAGCAGATCCCAACTTCACTGCCGCCCTTGCAGCTGCCATCACGTCAATAATTAGCGGCCAGTCCAACAACGCCAACACTATTCCATCGCCGGCTCCTCCCTGTGCCAGGGCTGATAATCCTGCTTCGGCTAAATTGCTCCACTGA___TTCTTAGACCGTAATTTATCTTCTGCCATGGAGGACCAATCTTTTTGCAGAGGGACTCAAATTCTTTGCAGATGTAACACTTGTGTCTGTCTACGGAGACGGTCATTCGGTGGAGTAACATGATTTGTTGAGATGTCATTACAAGTGCAGGAATAGCCAATTTGGGGTACATGTTGTGTTGATAGTCATCAGTATAGAACAGAGGCCAAACATTCTTTCATACACAGGGTTTTCTCCAGAGTTTGTATCTGGTTGGAACACAGCTAATATATACATCACTTTTCAAAGAAGAATAAGGAGAGAGATACTGGCTTTGTGAATAGACGTGTCACATCACATTTCATGACTACATTCTTTTCAGCTGTATCCCACTTGAACTTGAGGTCGCAGGCCTATCCTGAAATACCACTACAACACGGCTTGGCTGCCATTACTTGAAATGACAAAGGTTATTGTGAATATGCTAGGAGATCACTTTTACCTTCAGATCCAGAGCTATATAATTTGCTATTTTTGCATAATTTATTTGTTTAGAGGTTTACAAAATGTATGGTCAGACATAGCGGTAATCATCAA

Fln Alignment:

Contig7343___GDGAPSVASLGEGLRLGSQKTENK--EEGPXXXXXKGFNLSLLPANTGSDRSTVEDGMSPVRSQEPSNPDEGEPKS--ELMMLQVELNRMNEENQRLRLMLNYVSKNYGNLQMHLMSVMQQQPPPEKVEEKLN------GSSEGVKVDVAGPV-QRQFLDLVPISSHGTDSQHSLSSDTQDADEVEETAKSINNEVLSKKRDVATVNSTDKPRTCDVRVQQQQQRPGNDPAANSPTALNAQEKGHPDSPDHES--WTANKAQKVANKCAVDQT-EATIRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSVLVTTYEGSHNHXXXXXXXXXXXXXXXXXXXXXXGSTTSNDGGFNSSFMQAAAGSLMSCSPASMATISASAPFPTVTLDLTQNPNPNMYHRQPSGFPMPLG----GFPQL-PSHPPQIFSHSLFNTSKFAPLSGXXXXXXXXXVPHFSGHPMQQQTHMPVPISQYKAPQSSLMDTVS----AITADPNFXXXXXXXXXXXXXGQSNNANT
F6H7H0______________GDERREVDFFAEKTRSVSVKKENSHVDEAAITDLDVNTGLNLLTANAGSDQSTVED----------ENPDRENKRAKIEVAQLQVELERMNAENQKLRGMLNQVTNNYSTLQMHLVTLMQQQSQQNRGAESLQEHGSVGGKSDEKKHEVAGAVVPRQFIDLGPTA-------------TADTDEPSQ--------------------SSSEERTRDLSGSPQNHQE------------NGKGAGREESPESETQGWVQNKASKLSPPKTIDQSAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGTHNHPLPPAAMAMASTTSAAANMLLSGSMSSADGLMNPNFL---ARTILPCS-SNMATISASAPFPTVTLDLTHTPSPLQYQRPTSQFPVPFAAPAQSFPSAQTSSLPQVFSQALYNQSKFSGLQLSQDME--------SAHQAPPTLHQPQP--------ASLADTVSAATAAITADPNFTAALAAAITSIIGGGAAHPNT

SNPs (tot: 142)

Position	A %	C %	G %	T %	Probability
263		20	80		0.995493
267		20	80		0.995493
268	80	20			0.995493
271			20	80	0.995493
272		80	20		0.995493
273		20		80	0.995493
275		80	20		0.995493
278	20			80	0.995493
279		20	80		0.995493
280	80			20	0.995493
281		20	80		0.995493
335	20		80		0.995493
388	83			16	0.994512
391	83	16			0.994512
393	60		20	20	0.99255
394	80			20	0.995493
395	80		20		0.995493
397	80	20			0.995493
398	80			20	0.995493
401	80			20	0.995493
402		20	80		0.995493
403	20		80		0.995493
404		20	80		0.995493
405		80		20	0.995493
407	20	80			0.995493
486		33	66		1.0
541	83	16			0.994512
543	83	16			0.994512
545		83		16	0.994512
548		16	83		0.994512
552	83	16			0.994512
555	83			16	0.994512
556		16		83	0.994512
557	16		83		0.994512
558		16		83	0.994512
560	83	16			0.994512
561	16	83			0.994512
606		16	83		0.994512
633			14	85	0.993533
634	85			14	0.993533
639	85		14		0.993533
641		14		85	0.993533
645		85		14	0.993533
646	85		14		0.993533
648	85	14			0.993533
654		85		14	0.993533
655		14		85	0.993533
656	14			85	0.993533
740	80	20			0.995493
742		80		20	0.995493
745			75	25	0.996473
746		75	25		0.996473
747	25	75			0.996473
750			75	25	0.996473
754	75		25		0.996473
755	75	25			0.996473
756		80		20	0.995493
758	60			40	1.0
760	80			20	0.995493
761		20	80		0.995493
762	20			80	0.995493
763		40		60	1.0
764	20	20		60	0.99255
768			80	20	0.995493
769	80	20			0.995493
771		80	20		0.995493
779	20	80			0.995493
789		85	14		0.993533
790	71			28	1.0
791		85		14	0.993533
793			85	14	0.993533
797		85		14	0.993533
798		14	71		0.984337
799	85			14	0.993533
801			14	85	0.993533
802		85	14		0.993533
804		85		14	0.993533
805	85		14		0.993533
806	85			14	0.993533
809		14		85	0.993533
813	14	85			0.993533
859	88	11			0.923564
860		11	88		0.923564
864	88		11		0.923564
866			11	88	0.923564
868	88	11			0.923564
870	87			12	0.992554
871	87			12	0.992554
872			12	87	0.992554
874	87	12			0.992554
875	87			12	0.992554
880	12			87	0.992554
925		90	10		0.90298
926	90			10	0.90298
1067			77	22	1.0
1140	5		84	10	0.999846
1143	89			10	0.999919
1150	89			10	0.999919
1256	64	35			1.0
1307		10	90		0.999898
1310	90	10			0.999898
1311	90		10		0.999898
1312		90		10	0.999898
1313	90		10		0.999898
1316	88	11			0.999937
1318	88			11	0.999937
1319		88	11		0.999937
1321	88	11			0.999937
1322			83	11	0.999887
1324			88	11	0.999937
1325	88	11			0.999937
1327		11	88		0.999937
1342		11		88	0.999952
1343	88			11	0.999952
1344		88		11	0.999952
1550	20	80			0.995493
1627	66			33	1.0
1628		66	33		1.0
1629		66		33	1.0
1705	66		33		1.0
1706	33		66		1.0
2154	81	18			1.0
2158	81		18		1.0
2160		81	18		1.0
2163		18		81	1.0
2164	81	18			1.0
2166	81			18	1.0
2169	81		18		1.0
2171	81			18	1.0
2173	70	15		15	1.0
2174		15	85		1.0
2175	15		70	15	1.0
2177		85		15	1.0
2178	85		15		1.0
2180	80	20			1.0
2182	85			15	1.0
2184			15	85	1.0
2187	3		15	80	1.0
2190	84		3		1.0
2194	84			12	1.0
2380		7		92	0.999532
2384	62	37			1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
404	420	CCT CCT CCT CCT CCT CC	17
946	961	CAA CAA CAA CAA CAA C	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain