SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7326

Length: 613 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7326

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]	-	-	1.0e-38	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	ubiquitin carboxyl-terminal hydrolase 12	-	-	6.01577e-42	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular macromolecule metabolic process	GO:0044260	Biological Process	6.01577e-42	72%
Blast2go	primary metabolic process	GO:0044238	Biological Process	6.01577e-42	72%
Blast2go	ubiquitin-specific protease activity	GO:0004843	Molecular Function	6.01577e-42	72%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	MATH	IPR002083	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
36			66	33	0.997452
199			33	66	0.997452
209	83	16			0.994512
212	16		83		0.994512
213		16	83		0.994512
214		16		83	0.994512
217	83		16		0.994512
218	83		16		0.994512
220	83			16	0.994512
222	83			16	0.994512
223		16	83		0.994512
225		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain