SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7291

Length: 931 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7291

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin 5,3-O-glucosyltransferase n=3 Tax=Rosa hybrid cultivar RepID=ANGLT_ROSHC	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	udp-glucose: anthocyanidin -o-glucosyltransferase	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	61%
Blast2go	xenobiotic catabolic process	GO:0042178	Biological Process	61%
Blast2go	response to toxin	GO:0009636	Biological Process	61%
Blast2go	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXT2

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 310 - 464

Fln protein: RRDLGCHSGYPSIRFEDFPDSMKDKNHPLYPLFLSISYRMFQADGILINTFQELESRSIQGLVNGELLPRLDGIRMPSIYPIGPIISSPDSDHRDESACLQWLDNQPASSVIFISFGSFGFLSREQIGELALGLEVSRQRFLWVLRMPPHDSNPDLSALLPSGFEHRTKDRGLVITFWVPQISILAHPSTGAFLSHCGWNSVLESIRNGVPMVAWPLRADQKANAAFLVNDIKTAVGIQRRSDGIATKEEVLKAAREVMEGENAKKKRARAKEIKESAIAALADGGSSTRALAAVAGLWKKKPWSAQRNL

Protein Length: 311

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTACCCATCCATACGTTTTGAAGATTTCCCAGATTCGATGAAGGACAAGAATCACCCGCTTTATCCCCTTTTCCTCAGCATTTCATATCGCATGTTCCAAGCAGATGGGATTCTGATAAACACATTTCAAGAACTGGAGAGCAGAAGCATTCAAGGTCTCGTCAATGGCGAGCTTCTTCCGAGACTCGATGGGATCAGAATGCCCTCGATATATCCTATCGGGCCGATCATTTCTTCTCCAGATTCTGATCATCGGGACGAGAGCGCATGCCTGCAATGGCTGGATAACCAGCCGGCCTCTTCAGTTATCTTCATTTCGTTCGGAAGTTTCGGTTTTCTCTCGCGCGAGCAGATTGGGGAACTCGCTCTCGGGCTGGAAGTCAGCAGACAGCGTTTCCTGTGGGTTCTCCGAATGCCTCCCCATGATTCTAACCCAGACCTATCTGCGCTGCTACCCTCGGGTTTCGAACACCGGACCAAGGATCGTGGCCTGGTGATCACTTTTTGGGTTCCCCAAATTTCTATCCTGGCTCACCCATCTACCGGAGCTTTTCTGAGTCACTGTGGTTGGAACTCAGTGCTGGAGAGCATTCGGAATGGGGTTCCCATGGTTGCTTGGCCCCTTCGAGCGGACCAAAAGGCCAACGCCGCCTTTCTTGTTAACGACATTAAAACGGCGGTCGGAATTCAGCGCCGATCAGATGGGATTGCAACGAAAGAGGAAGTTTTGAAAGCGGCGAGGGAAGTGATGGAAGGAGAAAATGCAAAGAAAAAGAGGGCGAGAGCGAAAGAAATAAAGGAGAGTGCCATAGCAGCTCTGGCAGATGGTGGAAGCTCTACCCGCGCTCTGGCGGCCGTTGCGGGTCTGTGGAAGAAAAAACCATGGTCGGCGCAACGAAATTTGT

Fln Alignment:

Contig7291___GYPSIRFEDFPDSMKDKNHPLYPLFLSISYRMFQADGILINTFQELESRSIQGLVNGELLPRLDGIRMXXXXXXXXXXXXXXXDHRDESACLQWLDNQPAXXXXXXXXXXXXXLSREQIGELALGLEVSRQRFLWVLRMPPHD-SNPDLSALLPSGFEHRTKDRGLVITFWVPQISILAHPSTGAFLSHCGWNSVLESIRNGVPMVAWPLRADQKANAAFLVNDIKTAVGIQRRSDGIATKEEVLKAAREVMEGENXXXXXXXXXEIKESAIAALADGGSSTRALAAVAGLWKK
A9NXT2______________GLPSIPARDFPDPMQDKSGPFYHLFLRLSHELLKADGILINTFQDLESGSVQALLSGEI----DGTRIPSIYPVGPLISSPESDHHDGSGSLQWLDKQPAASVLFVSFGSVNFLSADQIAELALGLEGSGQRFLWVLPSPPNNASNPDVSALLPPGFEQRTKDRGLVVTSWAPQVAILAHPSTGGFVSHCGWNSVLESVSHGVTIIAWPLQAEQRTTAFFLVNDIKMAVRTKMGADGIVTKEEVEKAAKELMEGEDGKKKRERARELRESAKAALAEGGSSRQALAAAAALFCK

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
124		66	33		0.997452
125	66			33	0.997452
126	66	33			0.997452
128		66	33		0.997452
130		33	66		0.997452
131	66	33			0.997452
133			66	33	0.997452
136	66	33			0.997452
140	33			66	0.997452
141		33	66		0.997452
142	66			33	0.997452
143		33		66	0.997452
168		33		66	0.997452
210	33	66			0.997452
218	66		33		0.997452
258		66		33	0.997452
259			66	33	0.997452
327	66	33			0.997452
399		66		33	0.997452
484	75			25	0.996473
486		75	25		0.996473
490	33		66		0.997452
508		66		33	0.997452
557		66	33		0.997452
559		33	66		0.997452
563		66	33		0.997452
568		66		33	0.997452
569	66		33		0.997452
570			33	66	0.997452
573	66		33		0.997452
574		66		33	0.997452
577	33		66		0.997452
578	66	33			0.997452
579			66	33	0.997452
581	33			66	0.997452
661		66	33		0.997452
666		66	33		1.0
667	66			33	1.0
668	66	33			1.0
669	66		33		1.0
670	66			33	1.0
672	33		66		1.0
675	66			33	1.0
676	66			33	1.0
677		66	33		1.0
680		66		33	1.0
687		40		60	1.0
688	40			60	1.0
727		60	40		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain