SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7229

Length: 1297 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7229

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	laccase-like multicopper oxidase	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Laccase.	EC:1.10.3.2	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	response to copper ion	GO:0046688	Biological Process	71%
Blast2go	lignin catabolic process	GO:0046274	Biological Process	71%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	71%
Blast2go	copper ion binding	GO:0005507	Molecular Function	71%
Blast2go	laccase activity	GO:0008471	Molecular Function	71%
Blast2go	apoplast	GO:0048046	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Bacterial extracellular solute-binding family 1, conserved site	IPR006061	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRA7

Fln msg: your sequence is shorter than subject: 355 - 570

Fln protein: RRDLGCHSTYLLRMVNAALNSAHFFKIAGHKFTVVAVDASYTKPYKTDVIVIAPGQTTDVLVTADQPVGRYYMAARDYNNQAAGDFDNTTTTAIFEYVGHQNTRPILPKLPYYNDTAVVTRFSTALRSLNSKDFPVDVPHSIDDSLIATVGLGLLPCEAGNTCQGPNGTRLSASMNNMSFVLPSVAILQAYYFGINGVFMRNFPSKPPLRFNYTGDDIPKRLWAPDLATKVRVVTYNSTVQLVYQTTNIFVAENHPMHLHGYDFYVVGQGFGNYNPKTDPLKFNLVDPPKRNTVIAPISGWAAIRFKADNPGVWFLHCHLDDHLAWGLNMVFLVKNGHGPLATLEPPPADLPKC*

Protein Length: 356

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTACCTTCTACGGATGGTCAATGCTGCACTCAATAGTGCCCACTTTTTCAAGATCGCAGGCCACAAATTTACAGTAGTAGCTGTGGATGCTTCCTACACCAAGCCATACAAAACAGATGTAATCGTCATTGCTCCCGGCCAGACTACGGATGTTCTCGTCACCGCCGACCAACCAGTGGGCAGATACTATATGGCTGCCAGAGATTATAATAATCAGGCAGCAGGCGATTTCGATAACACTACAACTACAGCCATTTTTGAGTACGTGGGACATCAAAATACACGTCCCATTTTACCTAAGCTTCCATACTACAATGACACTGCGGTCGTCACTAGATTTAGTACAGCACTGAGAAGCCTAAATTCCAAAGACTTCCCAGTGGACGTTCCACATAGCATAGATGACAGCCTCATCGCCACAGTCGGGCTGGGATTACTTCCATGTGAAGCTGGAAACACCTGTCAAGGCCCCAACGGAACAAGGCTCAGTGCAAGCATGAACAACATGTCCTTTGTATTGCCCAGCGTGGCCATACTGCAAGCTTATTATTTCGGTATTAATGGTGTGTTTATGAGGAATTTTCCATCAAAACCTCCCCTTAGATTCAACTATACAGGGGACGATATTCCCAAAAGACTTTGGGCTCCTGACCTGGCAACAAAGGTGAGAGTTGTCACCTACAACTCAACAGTACAACTGGTGTATCAGACAACAAACATCTTCGTGGCAGAGAACCATCCAATGCATCTTCATGGTTACGATTTTTACGTGGTGGGACAAGGTTTCGGGAACTATAACCCAAAAACCGACCCGCTCAAGTTTAATCTGGTTGATCCTCCAAAGCGCAACACCGTCATCGCTCCAATAAGCGGATGGGCTGCAATAAGATTCAAAGCTGACAATCCAGGAGTGTGGTTTCTGCACTGCCATCTAGACGACCATTTAGCATGGGGATTGAATATGGTGTTCCTAGTGAAAAATGGTCACGGCCCTTTGGCAACATTGGAGCCTCCCCCTGCAGACCTTCCCAAGTGCTAG___AGAGAGAAGGAAATATCAATAAaCAcATCAtAATACTTCgCGAacACAAGGATCTGtACACATTGAgGGATCCTTATTGATTTAAAATCTACGGCCATTAGTGGCGTAGTTAAAATAAACTCAAACATGAAGGGCGAACTGTGTaTTTTATTCGTCGGACTGCAAACGGCACATGAATAGGCTAGGATTGTATGGATTGTCATTTTGGGATATTGAATTCAAGTTAGTTTTT

Fln Alignment:

Contig7229___TYLLRMVNAALNSAHFFKIAGHKFTVVAVDASYTKPYKTDVIVIAPGQTTDVLVTADQPVGRYYMAARDYNNQAAGDFDNTTTTAIFEYVGHQN-TRPILPKLPYYNDTAVVTRFSTALRSLNSKDFPVDVPHSIDDSLIATVGLGLLPCEAGNTCQGPNGTRLSASMNNMSFVLPSVAILQAYYFGINGVFMRNFPSKPPLRFNYTGDDIPKRLWAPDLATKVRVVTYNSTVQLVYQTTNIFVAENHPMHLHGYDFYVVGQGFGNYNPKTDPLKFNLVDPPKRNTVIAPISGWAAIRFKADNPGVWFLHCHLDDHLAWGLNMVFLVKNGHGPLATLEPPPADLPKC
C0PRA7______________TYLLRIVNAALNTGHFFKIARHKFTVVAVDASYTKPYKTDVIVISAGQTTDVLVTADQPVGKYYMAARPYNNQAAGAFDNTTTTAIIEYIGYQNSTRPIFPKLPFYNDTPVVTKFSKALRSLASPEHPVEVPQTVHKSFISTVGLGLLPCETGNTCEGPNGTRLSASMNNVSFVDPTIAILQANYFGINGVFSTDFPSKPPHKFNYTGDDIPRNLWFPLPATKVKVLNYNATVQLVFQSTNIFVAENHPMHLHGYNFYVIGEGFGNYNPKTDPLKFNLVDPPERNTVIAPVSGWVAIRFKADNPGVWFLHCHLDDHLVWGLNMVFIVKNGHGPLATLEPPPKDLPPC

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
773	87		12		0.992554
776			12	87	0.992554
778		87	12		0.992554
780		12		87	0.992554
781		12	87		0.992554
782			87	12	0.992554
784			12	87	0.992554
785	87		12		0.992554
788	72		18		0.999994
790		18		81	0.999994
792		10		90	0.90298
793			10	90	0.90298
802			90	10	0.90298
803		10	90		0.90298
804	60		30		1.0
806	90			10	0.90298
807	90	10			0.90298
808	10		90		0.90298
816			90	10	0.90298
970		20		80	0.995493
984	40		60		1.0
1004	80		20		0.995493
1138		57	42		1.0
1210	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain