SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7227

Length: 2124 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene7227
ATGGGGCTCTGAAATTCGGGTTGCTCCTTCTGCTTATAAGCCCAAATTCAACTCGAGCGGCACTGAGATTGGGTTTTCTAATCTGGAATTTCCCAACTCTGCTCAGACTGACAATTCGTGCAGAATATAGATTATTAACCAGCGGGAATTCACCCTTCAGCTTTACAAGCGATCGGCGACTCAGGGCATTTAGCTTGAAAGGCAGAATTGTGAGAATGAAGCTGCATAACCGGATCGGAAAGTATGAGTTAGGACGGATTCTCGGAGAGGGGAATTTCGCCAAAGTTAAGTACGCCATTGATGTGGAAACAAGGAAAAGCTATGCCGTCAAAATTTTGGACAAGGACACAGTTTTTCACTACAACATCGTCGACCAGATCAAGCGTGAAATATGCAGTATGAAGCTCATCAAACATCCGAACGTTGTGAGATTATACGAGGTTTTTGGCGAGTAAGAAGAAAATATATATTGTTCTTGAATTTGTCAAGGGAGGTGAATTGATGGACAAAATTTTGTATAGTGACAAGCTGGACGGAAGCGAAGTGAGAAAGTATTTTCAGCAGCTTATTGATGCCGTAGGATATTGTCACAGCAGGGGTGTTTATCACAGAGATTTGAAGCCGGAGAATCTTCTGCTGGATGCAAAAGGAAATGTGAAGATATCTGACTTCGGCCTCAGCGCGCTTCCAGAGCAATTTAGGGCAGACGGGTTGTTGCATACCACTTGTGGGAGCCCCAGTTACGTGGCACCCGAGGTGATTGCTAACAAAGGATACGATGGTGCTACTGCTGATGTTTGGTCTTGTGGGGTCATTCTATTTCTTCTTTTGACTGGCTGGCTGCCATTCGAAGACGAAAATCTTGCAGCTCTGTATCAGAAGATCTGCAAAAGCGATTTCCAGTGTCCAAAATGGCTATCTGCAGGCGCTCGCAAATTGCTCAAACGAATACTTGATCCCAATCCGAAGACACGCATAACTATAGGTGAAATAATGAAAGATGAGTGGTTTAAGCAAGGCTATTCCCCAGCGAAAGTTGTGGAGGAGGACACTTCCTTCGATGATGTGGCTGTTGCATTTACAAAGTCGCAGGAACATATGGTGAGGGAGGAAACGGGGCCGGTTCTCATGAACGCTTTTCAGTTAATAGCAATGTCAGGGAGCCTGGACCTCTCCGGTTTATTTGAAGAAGAGGATGCCGCCGAAAGGAAGACGAGATTCACATCCATGTTACCGGCCCAGGAGATTATACACAAAATCCAAGAAACGGTCGAAACCATGGGGTTTCAGGTCAAGAGCAAGAATAGCAAGCTAAAATTGGTACATGCGGATCCTAAATCGAAAGGGAGAAATGGACATCTTTGCGTGACAACGGAGGTGTTCAAGGTCACAGCCTGTTTGCACATGGTAGAGATCAGAAAATACTCCGGAAACATAACACAGTACAGAGAGTTGTGCAGAAAGTTATCAAGTGATCTTGGCTTCCAACCTGAAGTGTGGAGGGAGAGTGGCATTCCTGGTTGTAAAGTTGTGTAAGAATTAAAGTGTGATGAAGATAAAAAAATGGTGTTCGAACTGGATTCCGAGTGAGGTTTTCATGGTGAAACACTGGAATTAGTTTTTAATATTCTTACTTTTATACATCTGAGATGGCGTATGAAACGACCTATGATCTTCCACAAAGAGGAAGCAACTACTCACTTAGCATTAGAGCATCTATACGGGCAGTGAAAATTTATTATGGTTTTGTGGAAGCAACTACTTAGCATTGAGCATCTATTTTGGGAGTAGAAATTTATTGTGGTGGTGTGGTACTTGGTGAAGTGCACAGTGGTCTTCCATATCATCGACAGGAGTGCAAAACGAGCTGCAAGAACCCAACATTGCTGACAAATCCTTGTATTATCCTCGTTCAAGTCATTGAGGTGGGATTTTTGGTTCACAATGATGAGCCTTATGGACTTTATCGTCCAATTTGTAACATTTTTACAGTCATGTAACATGTTATCACAATAAATGCTTAATCTTCATAATGTAAGAGGGTGAAGCAAAAGGAAGACACGGTTGAGCATTTCCTTGGCATAATAAGAGGAAAGCAATGAATCTTAAATGTATGGATTAATC

Ace file of the UniGene sp_v2.0_unigene7227

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 3 n=8 Tax=rosids RepID=A0MNJ1_POPTR	-	-	57%
FL-Next	sp=CBL-interacting serine/threonine-protein kinase 26; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	cbl-interacting protein kinase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	73%
Blast2go	signal transduction	GO:0007165	Biological Process	73%
Blast2go	ATP binding	GO:0005524	Molecular Function	73%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	NAF domain	IPR004041	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	NAF/FISL domain	IPR018451	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q84VQ3

Fln msg: Separated hits, possible frame ERROR between 443 and 445,

Fln protein: MKLHNRIGKYELGRILGEGNFAKVKYAIDVETRKSYAVKILDKDTVFHYNIVDQIKREICSMKLIKHPNVVRLYExxLASKKKIYIVLEFVKGGELMDKILYSDKLDGSEVRKYFQQLIDAVGYCHSRGVYHRDLKPENLLLDAKGNVKISDFGLSALPEQFRADGLLHTTCGSPSYVAPEVIANKGYDGATADVWSCGVILFLLLTGWLPFEDENLAALYQKICKSDFQCPKWLSAGARKLLKRILDPNPKTRITIGEIMKDEWFKQGYSPAKVVEEDTSFDDVAVAFTKSQEHMVREETGPVLMNAFQLIAMSGSLDLSGLFEEEDAAERKTRFTSMLPAQEIIHKIQETVETMGFQVKSKNSKLKLVHADPKSKGRNGHLCVTTEVFKVTACLHMVEIRKYSGNITQYRELCRKLSSDLGFQPEVWRESGIPGCKVV*

Protein Length: 442

Fln nts: ATGGGGCTCTGAAATTCGGGTTGCTCCTTCTGCTTATAAGCCCAAATTCAACTCGAGCGGCACTGAGATTGGGTTTTCTAATCTGGAATTTCCCAACTCTGCTCAGACTGACAATTCGTGCAGAATATAGATTATTAACCAGCGGGAATTCACCCTTCAGCTTTACAAGCGATCGGCGACTCAGGGCATTTAGCTTGAAAGGCAGAATTGTGAGA_-_ATGAAGCTGCATAACCGGATCGGAAAGTATGAGTTAGGACGGATTCTCGGAGAGGGGAATTTCGCCAAAGTTAAGTACGCCATTGATGTGGAAACAAGGAAAAGCTATGCCGTCAAAATTTTGGACAAGGACACAGTTTTTCACTACAACATCGTCGACCAGATCAAGCGTGAAATATGCAGTATGAAGCTCATCAAACATCCGAACGTTGTGAGATTATACGAGGTxxxTTTGGCGAGTAAGAAGAAAATATATATTGTTCTTGAATTTGTCAAGGGAGGTGAATTGATGGACAAAATTTTGTATAGTGACAAGCTGGACGGAAGCGAAGTGAGAAAGTATTTTCAGCAGCTTATTGATGCCGTAGGATATTGTCACAGCAGGGGTGTTTATCACAGAGATTTGAAGCCGGAGAATCTTCTGCTGGATGCAAAAGGAAATGTGAAGATATCTGACTTCGGCCTCAGCGCGCTTCCAGAGCAATTTAGGGCAGACGGGTTGTTGCATACCACTTGTGGGAGCCCCAGTTACGTGGCACCCGAGGTGATTGCTAACAAAGGATACGATGGTGCTACTGCTGATGTTTGGTCTTGTGGGGTCATTCTATTTCTTCTTTTGACTGGCTGGCTGCCATTCGAAGACGAAAATCTTGCAGCTCTGTATCAGAAGATCTGCAAAAGCGATTTCCAGTGTCCAAAATGGCTATCTGCAGGCGCTCGCAAATTGCTCAAACGAATACTTGATCCCAATCCGAAGACACGCATAACTATAGGTGAAATAATGAAAGATGAGTGGTTTAAGCAAGGCTATTCCCCAGCGAAAGTTGTGGAGGAGGACACTTCCTTCGATGATGTGGCTGTTGCATTTACAAAGTCGCAGGAACATATGGTGAGGGAGGAAACGGGGCCGGTTCTCATGAACGCTTTTCAGTTAATAGCAATGTCAGGGAGCCTGGACCTCTCCGGTTTATTTGAAGAAGAGGATGCCGCCGAAAGGAAGACGAGATTCACATCCATGTTACCGGCCCAGGAGATTATACACAAAATCCAAGAAACGGTCGAAACCATGGGGTTTCAGGTCAAGAGCAAGAATAGCAAGCTAAAATTGGTACATGCGGATCCTAAATCGAAAGGGAGAAATGGACATCTTTGCGTGACAACGGAGGTGTTCAAGGTCACAGCCTGTTTGCACATGGTAGAGATCAGAAAATACTCCGGAAACATAACACAGTACAGAGAGTTGTGCAGAAAGTTATCAAGTGATCTTGGCTTCCAACCTGAAGTGTGGAGGGAGAGTGGCATTCCTGGTTGTAAAGTTGTGTAA___GAATTAAAGTGTGATGAAGATAAAAAAATGGTGTTCGAACTGGATTCCGAGTGAGGTTTTCATGGTGAAACACTGGAATTAGTTTTTAATATTCTTACTTTTATACATCTGAGATGGCGTATGAAACGACCTATGATCTTCCACAAAGAGGAAGCAACTACTCACTTAGCATTAGAGCATCTATACGGGCAGTGAAAATTTATTATGGTTTTGTGGAAGCAACTACTTAGCATTGAGCATCTATTTTGGGAGTAGAAATTTATTGTGGTGGTGTGGTACTTGGTGAAGTGCACAGTGGTCTTCCATATCATCGACAGGAGTGCAAAACGAGCTGCAAGAACCCAACATTGCTGACAAATCCTTGTATTATCCTCGTTCAAGTCATTGAGGTGGGATTTTTGGTTCACAATGATGAGCCTTATGGACTTTATCGTCCAATTTGTAACATTTTTACAGTCATGTAACATGTTATCACAATAAATGCTTAATCTTCATAATGTAAGAGGGTGAAGCAAAAGGAAGACACGGTTGAGCATTTCCTTGGCATAATAAGAGGAAAGCAATGAATCTTAAATGTATGGATTAATC

Fln Alignment:

Contig7227___RMKLHNRIGKYELGRILGEGNFAKVKYAIDVETRKSYAVKILDKDTVFHYNIVDQIKREICSMKLIKHPNVVRLYEVxLASKKKIYIVLEFVKGGELMDKILYSDKLDGSEVRKYFQQLIDAVGYCHSRGVYHRDLKPENLLLDAKGNVKISDFGLSALPEQFRADGLLHTTCGSPSYVAPEVIANKGYDGATADVWSCGVILFLLLTGWLPFEDENLAALYQKICKSDFQCPKWLSAGARKLLKRILDPNPKTRITIGEIMKDEWFKQGYSPAKVVE-EDTSFDDVAVAFTKSQEHMVRE--ETGPVLMNAFQLIAMSGSLDLSGLFEEEDAAERKTRFTSMLPAQEIIHKIQETVETMGFQVKSKNSKLKLVHADPKSKGRNGHLCVTTEVFKVTACLHMVEIRKYSGNITQYRELCRKLSSDLGFQPEVWRESGIPG
Q84VQ3______________RPKVQRRVGKYEVGKTLGQGTFAKVRCAVNTETGERVALKILDKEKVLKHKMAEQIRREICTMKLINHPNVVRLYEVxLASKTKIYIVLEFGTGGELFDKIVHDGRLKEENARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDAQGNLKVSDFGLSALSRQVRGDGLLHTACGTPNYAAPEVLNDQGYDGATADLWSCGVILFVLLAGYLPFEDSNLMTLYKKIIAGEYHCPPWLSPGAKNLIVRILDPNPMTRITIPEVLGDAWFKKNYKPAVFEEKEEANLDDVDAVFKDSEEHHVTEKKEEQPTSMNAFELISMSRALDLGNLFEEEEGFKRETRFAAKGAANDLVQKIEEASKPLGFDIQKKNYKMRLENV---TAGRKGNLRVATEIFQVSPSLHMIEVRKTKGDTLEFHKFYKKLSTSL--NDVVWKSGESSG

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
341		66		33	0.997452
380		66		33	0.997452
413	66		33		0.997452
422		66		33	0.997452
446	33			66	0.997452
779	80	20			0.995493
784			20	80	0.995493
786			80	20	0.995493
788			80	20	0.995493
790		20		80	0.995493
791	80	20			0.995493
794			80	20	0.995493
795		80		20	0.995493
797		25	75		0.996473
798	75	25			0.996473
1325	16		83		0.994512
1370		83		16	0.994512
1456	80	20			0.999996
1459		20		80	0.999996
1463	20	80			0.999996
1464	80	20			0.999996
1465		20	80		0.999996
1466	80			20	0.999996
1467	80			20	0.999996
1468	80		20		0.999996
1470		20		80	0.999996
1472	80		20		0.999996
1476	80			20	0.999996
1477		20	80		0.999996
1478	20			80	0.999996
1485		10	90		0.90298
1569	85		14		0.993533
1570	10			90	0.90298
1571		10	90		0.90298
1572			90	10	0.90298
1573		10		90	0.90298
1574	10		90		0.90298
1615	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain