SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7226

Length: 1114 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7226 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloroplast-targeted copper chaperone, putative n=1 Tax=Ricinus communis RepID=B9SYN0_RICCO	-	-	5.0e-27	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	chloroplast-targeted copper	-	-	0.0	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	0.0	57%
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC6

Fln msg:

Fln protein: MKGIDILCASPASTAICSSLEQRSLDRERSQSRLLERQGSKAFEPSNILPDQSRRDQRPRKSTERRRSNADHSARGIEPSPKEVEENARRSTHRSSSNYISRFSCSSIDQLAIVPYKASPAPKVVKKCPVINNNPLLSSTSLTDDIEVVVLRVSLHCQGCVGKVRKHISKMEGVTSFSIDIPKQKVTVIGNVTPSGVLESISRVKKNTELWSSSKSSNC*

Protein Length: 221

Fln nts: GCTATTTTGTGTCCCTGTTTTTTGGCCTCCATATTTACTCATTAGAATTTCCCCAGGCCTTCTGCTTCAGCAAATCTTTCCCAAA_-_ATGAAGGGAATTGATATCCTGTGCGCGTCCCCGGCATCGACTGCAATCTGTTCGAGTCTCGAACAACGGTCTCTTGACAGGGAAAGAAGCCAGTCGCGGTTGCTGGAGCGACAGGGCAGCAAAGCTTTCGAGCCGAGCAATATTCTTCCCGACCAGAGTCGAAGAGATCAGCGTCCCAGAAAGAGCACCGAGCGCCGACGAAGTAATGCCGATCACAGCGCCAGGGGAATCGAACCGAGTCCGAAAGAAGTCGAAGAAAATGCGAGAAGGTCCACGCACAGGTCGAGCAGTAACTATATAAGCCGCTTTAGTTGCAGCTCCATTGATCAGTTGGCGATTGTTCCGTACAAGGCATCTCCGGCCCCGAAGGTTGTAAAAAAATGTCCAGTCATCAATAACAATCCTCTGCTATCTTCCACGTCATTGACGGACGATATTGAGGTGGTAGTGCTGAGGGTGTCGCTCCATTGCCAGGGCTGTGTAGGGAAAGTGAGAAAACACATTTCAAAGATGGAAGGGGTGACATCATTCAGCATAGATATTCCGAAGCAGAAGGTGACAGTAATAGGAAACGTGACGCCATCAGGAGTACTGGAGAGCATTTCCAGGGTTAAAAAGAACACAGAGCTGTGGTCCAGCTCAAAGAGCAGCAACTGTTAA___AAGAATAATACAGTAATCTATGGCCTGACAATATTAGTTCCATCTCAATTGCCATTGGGATCGGGTACAACATAGACTCTCAGACAATTGGAGTCAAGCCAATCTAAAGGTCTGCATCTACATAGTCAGTCTTTCGGTGTCATCTGGAGCAATATGAGCAGCTGTACTAATATCTGGAGCAACAAGAGCAGTAGCTGCTGCAGCAAAGCAGGGGGCACCATTGTGACATCCCAACCAAGAACCTGCCTTTTCTTCATGAATCTTGACCGATTCTAGTATGATCGGTTTTGTTTTCTACTTAATATCAATGTTGATTTCTGCTAAGATGGAATCTTGACTAAAATTGGATTGTAGAGCACGTCACATCTC

Fln Alignment:

Contig7226___MKGIDILCASPASTAICSSLEQRSLDRERSQSRLLERQGSKAFEPSNILPDQSRRDQRPRKSTERRRSNADHSARGIEPSPKEVEENARRSTHRSSSNYISRFSCSSIDQLAIVPYKASPAPKVVKKCPVINNNPLLSSTSLTDDIEVVVLRVSLHCQGCVGKVRKHISKMEGVTSFSIDIPKQKVTVIGNVTPSGVLESISRVKKNTELW
A9NPC6______________MKAIDIFCASPASTAICLSLEQRSLVRQGSQTRLLERQGSGAFEPSNVLPDQSRRE-RPRKSTERRRSNADQSARVIEPSPRGIEQKPRRSTHRRSSNSISRFSCSAIDQSAIVPYQPPPVPKPVKKSPVVINDHPASSSSSTDATEVVVLRVSLHCQGCAGKVKKHISKMEGVTSFSIDLPKQKVTVVGNVTPLEVLESISRV-KNAELW

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
232		87		12	0.992554
412		25		62	1.0
503		14		85	0.993533
512	14	85			0.993533
514	14	71			0.984337
539		83		16	0.994512
545		83	16		0.994512
548	14			85	0.993533
549	85		14		0.993533
569	16	83			0.994512
572		83	16		0.994512
594	83		16		0.994512
597			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain