SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7210

Length: 1391 nt

Origin of reads: Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7210 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	42%
Blast2go	ramosa 1 enhancer locus 2	-	-	4.37085e-09	78%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: D7U9Y9

Fln msg: Separated hits, possible frame ERROR between 165 and 183, query STOP codon too far from subject stop. Distance to subject end: 71 aas, putative chimeric sequence, your sequence is shorter than subject: 105 - 1132

Fln protein: KIITTSGGVGGNKSTVS*DQIHLLVVQESQHAIYDTSKLKRLRYVITFDSS*FPxxxxxxxALYSCDNGLVYVSFCEGGVFDYENLRLHCRIAPSAILFIYHRE*

Protein Length: 106

Fln nts: AAGATCATCACCACCAGTGGGGGAGTGGGGGGAAACAAGAGTACAGTTTCATAAGATCAAATTCATTTGTTGGTTGTGCAGGAGAGCCAACATGCTATATATGATACTTCTAAGTTAAAGCGCTTGCGCTATGTAATTACTTTCGACTCCTCATGATTCCCTATxxxxxxxxxxxxxxxxxxTGCTCTATACTCATGCGACAACGGCCTAGTTTATGTGAGCTTCTGTGAAGGTGGAGTGTTTGATTATGAAAACTTGAGGCTTCACTGTCGCATTGCACCCTCTGCCATATTATTCATTTACCATCGGGAATGAACAGTAGTAATGCCTATCCTCTAGTCGTTGCATCATTGCATCACATCCATCCGAACCGAATCAATTTTCTCAAATTTCTTTTAGAATAAGAGACGGAGGAACCATGGTGTCACGCATTCAGAGTAAGAAGGGAAGTAAGATGGGAAATGGGTGTTGGACCACCCCCATAGAATGGAATTGTCGATCAAATCCAACATGATGTAGTAACCAAGGTTCGGAGCCACCCTAAAGGTAGTTCAATGGGAACATAAGAACAATTTGCATTACACTGTACTACTTTGTGTCTACCGACTGTTTATTTACAAGAATACCGTGAATAATGGTAGCGTCCTGTCAGTGAAATGCCTCACTTTTGTTCCAGTTGTTGAGGCATTCTATCAAGATTGTAATTATCATCAGATATTGTTCAGTACACATCTAGCTTGTGTTCCATCTGTTGAGGCATTCTATCAAGGTCGTAATTTTCATCAAATATTGTTCATACTAAATGAGTATCTAGGAGCAGTATATTCTTTCTAGGTCGTGTAAAAATTTGAAGTCTGGCATTGGAGCGTAATTCATGAATGTTCGTGAAGTCTGGCATTGGAGCGTAATTCATGAATGTTCTTTCCGAGGGTTTCTCAGTGTCGGAAGCTTTGTCATTGTCTATTTCCTTTCAGATCACTATATCTGCAAAAAGAAACCACTCCCATCAGCCCACCAACCCGCTACCGATAAAAGCAGCACGAGGTACAGGAGACATACGATCAGCCCAGCAATCGAAAAAAGTCAATAGGTTGGGCAGCTATAGGCTTTCATGATATTATATGATCCTACAACTAGGCTTATAGCGATACATTTTCATCACCTAAGCAACCCTGATTAGCCAACCAGGCTCACGAGGTTTCATCTTGCTGAACAATCAGACCAGCCGTATGGGCTGCTGGTGGTTCTCGATCTTCAAGTGCAGGTGATGCGCTGCCTGCGGGAATATTATAGTTATTAACCAAATCAGCGTTTTTGGGTTGAATGCCCACTTTGATTGAAGTAATGCAATTGATAAAACATTAATTATGCACGAGTTTCTGCAGTTGACCC

Fln Alignment:

Contig7210___VGGNKSTVS*DQIHLLVVQESQHAIYDTSKLKRLRYVITFDSS*FPIxxxxxxALYSCDNGLVYVSFCEG--GVFDYENLRLHCRIAPSAIL
D7U9Y9______________IGDTRVQFHSDQIRLLVFHETQLATYDASKMERIRQWIPQDGLSAPIxxxxxxAAYSCNSQLIYATFCDGNIGVFDADSLRLRCRIAPSAYL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
811		40		60	1.0
846	20		80		0.995493
866	40	60			1.0
889	50		50		1.0
925	33		66		0.997452
926		33		66	0.997452
1203	33		66		0.997452
1214			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain