SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7182

Length: 1661 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7182

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	71%
Blast2go	suppressor of auxin resistance1 protein	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	64%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	64%
Blast2go	mRNA export from nucleus	GO:0006406	Biological Process	64%
Blast2go	protein binding	GO:0005515	Molecular Function	64%
Blast2go	cytosol	GO:0005829	Cellular Component	64%
Blast2go	peripheral to membrane of membrane fraction	GO:0000300	Cellular Component	64%
Blast2go	nuclear membrane	GO:0031965	Cellular Component	64%
Blast2go	endosome	GO:0005768	Cellular Component	64%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	64%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	64%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	64%
Blast2go	plasma membrane	GO:0005886	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	Protein of unknown function DUF1677, Oryza sativa	IPR012871	-	-
Sma3	Gastrin/cholecystokinin, conserved site	IPR013152	-	-
Sma3		IPR015706	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HTQ4

Fln msg: Separated hits, possible frame ERROR between 106 and 120, your sequence is shorter than subject: 383 - 1117

Fln protein: PYKLLYAFYMYRQNWRRAADYIYRYSARLKDVVIxxxxxxLSFTLQERLQGLTAAINALHLVDPAYAWIDFRQESSAVGPIQKESAKQYQPIDIEQLEKEYVLTLAHLQLAVANVKHSSLGGDILPSDLVVLLVQSNLYEMAFTVIFKFWRDSSLKRELEKVVQIMAQKCCTSKSSSSLMKESPANVLLIPSSAREDQTDVDILCGTNFQTVQHTNLKTAWHALQLYLEKYKGLHSQLPVVAAETLLCTDPQIELPLWLVDMFKGARKATAWGMAGQESDPAALFRLYIEYGRFSDATHLLLEYLEAWASLRPADIIKRKKMSAVWFPYTSVERLYGLLSEMRNSGQMIDQCDKLQKLLHCAMLHHLKQMKVDSDDVKSSSL*

Protein Length: 384

Fln nts: TCCTTACAAGCTCCTTTATGCTTTTTACATGTATCGACAAAACTGGCGAAGGGCTGCTGATTACATTTATAGGTATAGTGCCCGCCTGAAGGACGTGGTGATCTTxxxxxxxxxxxxxxxACTATCTTTCACATTGCAAGAGAGATTGCAAGGGCTGACTGCTGCTATTAATGCTCTGCATTTAGTTGATCCTGCATATGCTTGGATTGATTTTCGACAAGAGAGCTCTGCTGTAGGCCCTATCCAGAAGGAATCTGCAAAGCAATATCAACCTATTGATATAGAGCAGCTGGAAAAGGAATATGTGCTGACTTTGGCACATCTACAACTTGCAGTTGCAAATGTCAAGCATTCTTCACTAGGAGGTGATATACTACCATCAGATCTGGTGGTATTGTTGGTGCAGTCCAACTTATATGAGATGGCATTTACAGTTATTTTCAAATTTTGGAGGGATTCATCATTAAAGAGGGAACTAGAGAAAGTTGTCCAGATCATGGCTCAGAAGTGCTGCACAAGTAAATCTAGCTCTTCGTTGATGAAGGAATCACCTGCAAATGTGCTTCTCATACCATCTTCAGCAAGGGAGGATCAAACTGATGTTGATATTTTGTGTGGCACTAACTTTCAGACTGTACAACACACAAATTTGAAGACTGCGTGGCATGCGCTTCAATTATATCTTGAAAAATACAAAGGATTACATAGCCAACTTCCAGTTGTTGCTGCTGAAACTCTGCTATGTACAGACCCTCAAATTGAGCTACCATTGTGGCTAGTGGACATGTTCAAGGGTGCAAGGAAAGCAACTGCTTGGGGAATGGCTGGTCAAGAGTCAGACCCTGCAGCGTTGTTCCGACTATATATAGAGTATGGCAGATTCTCAGATGCGACTCATCTATTGCTCGAGTACTTGGAAGCATGGGCATCTCTGAGGCCTGCTGATATCATCAAGCGTAAAAAAATGTCTGCAGTGTGGTTTCCATACACGTCAGTTGAACGTCTATATGGCCTTTTGTCTGAGATGAGAAACTCTGGGCAAATGATTGACCAGTGTGACAAACTCCAGAAATTATTGCATTGTGCTATGTTGCATCACTTGAAACAGATGAAAGTGGATTCAGATGATGTAAAATCTTCTTCTCTATAATATATTTATTGCAAATATGTCTATGCTGGTGATGCCCTTCCAACATTTTGAAGATGCATCCCATGAAGCTACTGTCATGAAAATAGCATCAGATGGAACTGCGGGTGGTTTCGGCTGTTACTAGATGTTGAGAACAGCAGAACATTCTGTCAGAGGCTACAGTGAAATCTGCTCTTGCTTACAAAGGCCACGAGTCGGTAATATTGAGGCACTTTGTACTATTGTGATCTGGAGATTACAAAATATGACAACATTTTCGAGCTAGTCATTAGTTACAATGTATATTTCAAGTTACACGGAAATATGTGTCCACAAGGATATGCTACATTTAAGGGTTTCCACACTTAACTCGGCATGAGACAATTTTGTGAAGTGTAGGACACAATTTTTGTCAGAGTTTGTTCACTGTGCAATGATTTCAATCTAGAGATGAATTGTATATTAGAATACAATTCGATTTAAAATAGTAAAAGCCTTATATTTTTACAAGAAGAATCTTTCATTGAATACCAA

Fln Alignment:

Contig7182___PYKLLYAFYMYRQNWRRAADYIYRYSARLKDVVILxxxxxLSFTLQERLQGLTAAINALHLVDPAYAWI-----------DFRQESSAVGPIQKESA-------KQYQPIDIEQLEKEYVLTLAHLQLAVANVKHSSLGGDILPSDLVVLLVQSNLYEMAFTVIFKFWRDSSLKRELEKVVQIMAQKCCTXXXXXXLMKESPANVLLIPSSAREDQTDVDILCGTNFQTVQHTNLKTAWHALQLYLEKYKGLHSQLPVVAAETLLCTDPQIELPLWLVDMFKGARKATAWGMAGQESDPAALFRLYIEYGRFSDATHLLLEYLEAWASLRPADIIKRKKMSAVWFPYTSVERLYGLLSEMRNSGQMIDQCDKLQKLLHCAMLHHL
F6HTQ4______________PYKLLYAFEMHRHNWRRAASYIYLYSARLRTESVLxxxxxLSLTLQERLNGLSAAINALYLVHPACAWINPLLGGNPLHNEHYPSKKAKKMVEEQSSSNDAQLQKLYSYVDVEKLENEFVLTTAEYLLSLANVKWTYTGMQKLPSDLVDLLVETNLYDMAFTIVLKFWKGSGLKRELERIFIAMSLKCCPNRVGSSLTR---THGLLLTSS--KDDTAIHGSIDPDPST-QQSNGSNRWETLELYLEKYKGFNARLPVIVAETLLRTDPQIELPLWLVHMFKGNQKESYWGMTGQESNTATLFQLYVDHGRYTEATTLLLEYIESFASMRPADIIHRKRPSAVWFPYTTIERLWCQLEEMISSGNMVDQCDKLKKLLHEALLRHL

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
671	16		83		0.994512
770	87		12		0.992554
982	25			75	0.996473
983	25			75	0.996473
985		75	25		0.996473
986		75		25	0.996473
1011	20			80	0.995493
1012			80	20	0.995493
1014		80		20	0.995493
1018		40		60	1.0
1145	16	83			0.994512
1147		83	16		0.994512
1148			16	83	0.994512
1224		50	50		1.0
1260	16		66	8	0.999991
1261		8		75	0.99999
1278		42		57	1.0
1289			88	11	0.999952
1347	7	35		57	1.0
1380		45		54	1.0
1414		54		45	1.0
1468	40		60		1.0
1505	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain