SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7084

Length: 1643 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7084

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NC domain-containing protein [Oryza brachyantha]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	nc domain-containing protein	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	-
Sma3	LRAT-like domain	IPR007053	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN59

Fln msg: your sequence is longer than subject: 500 - 408

Fln protein: MGILFNEVDRSDLRAGDHVYSWRTGYTYAHHGIFVGDDDVVHFTRGLGQEIGAGVSLINSFAASSIPKQHLSCPRSPESCGLQHGNSGVIRSCLDCFLEGGAVHRFEYGVSKAVFLAQVRGGTCTLAQSDPPDEVIHRAMYLHKHGFGNYDLFCNNCEDFAIYCRTGYIVKRKASGKSGQVAAMDGVRSASRLAYDHRDMLTSSLGLAIMLVGTYSLKRYAADIGVRADKTKVTVENLATFLDSSTSIGLDKTKVPVQDSSVYRASSTDSSVDKAKLQGEDVAVFLDSCTGKKLQELGDLAVSPNSSIGISVDKSKVPIENSAVNLESAGIRVDKIKAPVASSTGKKPPAEDLAAYFDSSTDIFADKSKVPVEAEALFLDSSTVKKPSADESSTSQAINRKRSSKKQKKKLRQQQRRNCELMQEVEDVAQFPDSSTGKKPPVEDVAVSLVSSTAEKPPVTENSSSPAISRNRSSKKQKKKLRQQQRRSCQVSTSGMPEW*

Protein Length: 501

Fln nts: ATGGGGATCGTCTTGCAAATCTGAAAACGTTTCGCTTGCTATTTCGACAACCGGAGGGTTTTCTGCATTGCGCCATCAACCGACTCTGCTGATCCAGCTCACTTCACATAATCTAA_-_ATGGGCATTCTCTTCAACGAGGTGGACAGGAGCGATCTTAGAGCTGGCGACCATGTTTACTCATGGAGGACAGGTTACACATATGCTCACCACGGGATTTTTGTTGGGGATGATGACGTTGTCCATTTTACAAGAGGGTTGGGTCAAGAAATTGGAGCAGGGGTCAGTTTAATTAATTCGTTTGCCGCTTCTTCAATACCAAAACAACATCTCAGTTGCCCAAGATCTCCTGAAAGCTGCGGCCTCCAACATGGAAATAGTGGAGTGATCCGGTCTTGTCTAGATTGTTTTCTTGAGGGAGGAGCTGTGCATCGATTTGAGTATGGTGTTAGTAAAGCTGTATTTTTGGCACAAGTCCGCGGAGGAACATGTACACTTGCACAGTCGGATCCCCCAGACGAAGTCATTCACCGTGCAATGTATCTGCATAAACATGGTTTTGGAAACTACGATCTATTTTGTAACAACTGTGAGGACTTTGCAATATACTGCAGGACGGGATACATTGTTAAAAGAAAGGCCTCAGGAAAAAGTGGGCAAGTAGCAGCTATGGATGGCGTTCGTTCTGCTTCTCGTCTCGCCTATGACCATCGAGATATGCTTACTAGCTCACTAGGCCTCGCAATTATGCTGGTTGGAACTTACTCTTTAAAGAGATATGCAGCAGATATTGGTGTTCGTGCTGATAAAACTAAGGTGACGGTGGAAAATTTGGCTACATTTCTTGATTCTTCAACTAGTATTGGCCTTGATAAAACTAAGGTACCAGTGCAAGATTCGTCTGTATATCGTGCTTCCTCAACAGACAGTAGCGTAGATAAAGCTAAGTTACAAGGGGAAGACGTGGCTGTATTTCTTGATTCTTGTACTGGTAAGAAGCTTCAAGAGTTGGGAGATTTGGCAGTATCTCCCAACTCTTCAATTGGTATTAGCGTTGATAAAAGCAAGGTACCAATAGAAAATTCGGCTGTAAACCTTGAATCAGCTGGTATTCGTGTTGATAAAATAAAGGCACCAGTGGCTTCTTCAACTGGTAAGAAGCCTCCAGCGGAAGATTTGGCTGCATATTTTGATTCCTCAACTGATATTTTTGCTGATAAAAGTAAGGTACCAGTGGAAGCTGAGGCTCTATTTCTTGATTCGTCAACCGTCAAGAAACCTTCAGCGGATGAAAGCTCCACATCGCAGGCAATAAACAGAAAGAGAAGCTCCAAGAAGCAGAAAAAGAAGCTCCGTCAACAACAGAGAAGAAACTGTGAATTAATGCAAGAAGTTGAAGATGTGGCTCAATTTCCTGATTCCTCAACTGGTAAGAAGCCTCCAGTGGAAGATGTGGCCGTTTCTCTTGTTTCTTCTACTGCTGAGAAGCCTCCAGTGACTGAAAATTCCTCATCTCCGGCAATCAGCAGAAACAGAAGCTCCAAAAAGCAGAAAAAGAAACTCCGTCAACAGCAAAGAAGGAGCTGTCAAGTGTCAACCAGTGGAATGCCCGAATGGTAG___TGGACCCTGCATTCTCCAAGGAAATTG

Fln Alignment:

Contig7084___MGILFNEVDRSDLRAGDHVYSWRTGYTYAHHGIFVGDDDVVHFTRGLGQEIGAGVSLINSFAASSIPKQHLSCPRSPESCGLQHGNSGVIRSCLDCFLEGGAVHRFEYGVSKAVFLAQVRGGTCTLAQSDPPDEVIHRAMYLHKHGFGNYDLFCNNCEDFAIYCRTGYIVKRKASGKSGQVAAMDGVRSASRLAYDHRDMLTSSLGLAIMLVGTYSLKRYAADIGVRADKTKVTVENLATFLDSSTSIGLDKTKVPVQDSSVYRASSTDSSVDKAKLQGEDVAVFLDSCTGKKLQELGDLAVSPNSSIGISVDKSKVPIENSAVNLESAGIRVDKIKAPVASSTGKKPPAEDLAAYFDSSTDIFADKSKVPVEAEALFLDSSTVKKPSADESSTSQAI
B8LN59______________MGILFNEVDRSDLRAGDHVYSWRTGYTYAHHGIFVGDNDVVHFTRGSGQELEAGASLINSFASSSIPKQHLSCPRYPDSCGFQHGNSGVIRSCLDCFLEGGPVYRFEYGVSKAVFLAQVRGGTCTLAQSDIPGTVINRAIYLHKNGFGNYDLFSNNCEDFAIYCKTGFIVNRNASGRSGQVAAVNGVCSASRFAFDHRDMLNNSLGLALILAGTFFYNRFKADIGVRVDKTKVPVEDLAVYFDSSTRIRVDKTKIPVEDPAVYPDSSTGIRVDKTKVRVEDVTVFLESFTGKK-PPVQDSAVYLDSSTGIGVEKNKLAVAEGAVFLD---------------SSTRKNPVQDLAVYADSSTGIGVGKTKLPVEDVVVFPDSSTGKKPPVAESSTSQAI

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1015		12		87	0.992554
1021	12		87		0.992554
1043	14		85		0.993533
1055	85		14		0.993533
1082		83		16	0.994512
1207			25	75	0.996473
1323	80		20		0.995493
1324	80		20		0.995493
1469	11	88			0.923564
1521	12	87			0.992554
1541	87		12		0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain