SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7065

Length: 479 nt

Origin of reads: Biogeco1 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene7065
ATGGGGGTCATGAGTGTTCGATCTGCCATAAGGTCTTTCTCTCAGGTCAAGCTCTTGGGGGGCATAAGAGGTGCCATTGGACTGGGGATGGGGTTACAGAGACAGCAAGCAGCGTGATTTCAACAGAACAGAAACCAAAGGCACTGGCTAGGAATGAAAGAGAGCTTCCTTTCGATCTGAATGAACTGCCGCCAGTGGAAGAGGAGGATCTTGTAGTACCTGCTTGTGCTGAGAGTGTTGATAAGAGAGTAAAGATGCTGGGACCTGTGATAAACACTGGATTTACACATGTACAGTGTAACATCTGTGGCTGCTTGTTCACATCCATGGAATGTTTGAGAACACACCAGATTGCGCATGCGTTGATGCCTGCATCCTGATCTTTTTTGCCACTGTGAATATCTGGGTGCTTCTGGATATACAAAATATTTGAACTATCTATTCGATGTATGATCTTTTGTAAGGATATTTGGCACTAA

Ace file of the UniGene sp_v2.0_unigene7065 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EPF-type Cis2-His2 zinc finger transcription factor n=2 Tax=Selaginella moellendorffii RepID=D8RG79_SELML	-	-	4.0e-09	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	zinc finger protein	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	77%
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8P1

Fln msg: your sequence is shorter than subject: 126 - 158

Fln protein: GGHECSICHKVFLSGQALGGHKRCHWTGDGVTETASSVISTEQKPKALARNERELPFDLNELPPVEEEDLVVPACAESVDKRVKMLGPVINTGFTHVQCNICGCLFTSMECLRTHQIAHALMPAS*

Protein Length: 127

Fln nts: ATGGGGGTCATGAGTGTTCGATCTGCCATAAGGTCTTTCTCTCAGGTCAAGCTCTTGGGGGGCATAAGAGGTGCCATTGGACTGGGGATGGGGTTACAGAGACAGCAAGCAGCGTGATTTCAACAGAACAGAAACCAAAGGCACTGGCTAGGAATGAAAGAGAGCTTCCTTTCGATCTGAATGAACTGCCGCCAGTGGAAGAGGAGGATCTTGTAGTACCTGCTTGTGCTGAGAGTGTTGATAAGAGAGTAAAGATGCTGGGACCTGTGATAAACACTGGATTTACACATGTACAGTGTAACATCTGTGGCTGCTTGTTCACATCCATGGAATGTTTGAGAACACACCAGATTGCGCATGCGTTGATGCCTGCATCCTGA___TCTTTTTTGCCACTGTGAATATCTGGGTGCTTCTGGATATACAAAATATTTGAACTATCTATTCGATGTATGATCTTTTGTAAGGATATTTGGCACTAA

Fln Alignment:

Contig7065___GHECSICHKVFLSGQALGGHKRCHWTGDGVTETASSVISTEQKPKALARNERELPF-XXXXXXXXXXXXXXXPACAESVDKRVKMLGPVINTGFTHVQCNICGCLFTSMECLRTHQIAHALMPAS
D5A8P1______________GHECSICHKIFPSGQALGGHKRCHWTGDRVTETASSVISTEKQPKAPARNARDLPFDLNELPPVEEEDLEVVPACARSVDKRVKMLGPVINTGFTHVRCIICGCVFTSMECLRTHQIEHALMPAS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
126		85		14	0.993533
249		85	14		0.993533
252		85		14	0.993533
256	85		14		0.993533
257		14	85		0.993533
264		85		14	0.993533
265			28	71	1.0
267		85	14		0.993533
268	71		14	14	0.984337
274	16	83			0.994512
275			16	83	0.994512
278	16			83	0.994512
279	16	83			0.994512
280			16	83	0.994512
281			16	83	0.994512
282		66		33	1.0
283		83	16		0.994512
285		83	16		0.994512
288	33		66		1.0
290	16		83		0.994512
297			20	80	0.995493
301		20		80	0.995493
302			20	80	0.995493
303	20	80			0.995493
304	80	20			0.995493
390		33		66	0.997452
392		33		66	0.997452
395		66	33		0.997452
396		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain