SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7057

Length: 514 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene7057
ACCGTCTGTATGACTGGATCACAGATTATGCAATGCATTTCCCACATTCGAAGTCAAGTACATGGGTTTTAGGCTTCTCTTCACGGTGGATCCTGCAAACATTGAGTACATTCTCAAGACCAATTTCTCCAATTATGTCAAAGGCCCTGCAGCTCATGAGATACAATATGACTTGCTGGGTGATGGCATCTTTAATTCGGATGGAGAAATGTGGAAGCTCCAACGCAAGTCTGCCAGCCTTGAGTTTTCATCTAAGATGTTACGAGATTACAGTACATATACCTTCAGGAAATATGCCCTCAAATTAGCCGTGATTTTGGAGGGACAGATAGCCCACAGTAATAACAAATTGGTAGCCAATATGCAGGATCTGTTCATGCGGCTGACATTTGATTCAATATGCGAGCTGGGGTTTGGGGTTGAAATAGGTTCTCTGGATTCCTCCCTTCCAGACGTTCCATTTGCTTCGGCTTTTGACAGATCTAACGCCCTCTGCGCCTCTCGATACTTCGAC

Ace file of the UniGene sp_v2.0_unigene7057 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome P450, family 704, subfamily B, polypeptide 1 [Arabidopsis thaliana] gb\|AAG60111.1\|AC073178_22 cytochrome P450, putative [Arabidopsis thaliana] gb\|AEE34933.1\| cytochrome P450, family 704, subfamily B, polypeptide 1 [Arabidopsis thaliana]	-	-	8.0e-38	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	cytochrome p450 704c1-like	-	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alkane 1-monooxygenase.	EC:1.14.15.3	-	0.0	70%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid metabolism	00071	70%
Blast2go	Arachidonic acid metabolism	00590	70%
Blast2go	Retinol metabolism	00830	70%
Blast2go	Metabolic pathways	01100	70%

Source	GOs	Term	Type	Identity
Blast2go	sporopollenin biosynthetic process	GO:0080110	Biological Process	70%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	70%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	70%
Blast2go	heme binding	GO:0020037	Molecular Function	70%
Blast2go	oxygen binding	GO:0019825	Molecular Function	70%
Blast2go	alkane 1-monooxygenase activity	GO:0018685	Molecular Function	70%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT68

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 295 aas, your sequence is shorter than subject: 171 - 543

Fln protein: PSV*LDHRLCNAFPTFEVKYMGFRLLFTVDPANIEYILKTNFSNYVKGPAAHEIQYDLLGDGIFNSDGEMWKLQRKSASLEFSSKMLRDYSTYTFRKYALKLAVILEGQIAHSNNKLVANMQDLFMRLTFDSICELGFGVEIGSLDSSLPDVPFASAFDRSNALCASRYFD

Protein Length: 172

Fln nts: ACCGTCTGTATGACTGGATCACAGATTATGCAATGCATTTCCCACATTCGAAGTCAAGTACATGGGTTTTAGGCTTCTCTTCACGGTGGATCCTGCAAACATTGAGTACATTCTCAAGACCAATTTCTCCAATTATGTCAAAGGCCCTGCAGCTCATGAGATACAATATGACTTGCTGGGTGATGGCATCTTTAATTCGGATGGAGAAATGTGGAAGCTCCAACGCAAGTCTGCCAGCCTTGAGTTTTCATCTAAGATGTTACGAGATTACAGTACATATACCTTCAGGAAATATGCCCTCAAATTAGCCGTGATTTTGGAGGGACAGATAGCCCACAGTAATAACAAATTGGTAGCCAATATGCAGGATCTGTTCATGCGGCTGACATTTGATTCAATATGCGAGCTGGGGTTTGGGGTTGAAATAGGTTCTCTGGATTCCTCCCTTCCAGACGTTCCATTTGCTTCGGCTTTTGACAGATCTAACGCCCTCTGCGCCTCTCGATACTTCGAC

Fln Alignment:

Contig7057___FPTFEVKYMGFRLLFTVDPANIEYILKTNFSNYVKGPAAHEIQYDLLGDGIFNSDGEMWKLQRKSASLEFSSKMLRDYSTYTFRKYALKLAVILEGQIAHSNNKLVANMQDLFMRLTFDSICELGFGVEIGSLDSSLPDVPFASAFDRSNALCASRYFD
C0PT68______________FPTFEAKYIGFRLLFTVDPANVEYILKTNFSNYVKGPAAHEIQYDLLGDGIFNTDGEMWKLQRKSASLEFSSKMLRDYSADAFRKYALKLAMILQGQLAHNNN--VANMQDMFMRMTFDSICEVGFGVEIGSLASSLPDVPFASAFDRSNALCASRYFD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain