SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7032

Length: 1540 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7032

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	methyltransferase-like protein 1 [Arabidopsis thaliana] emb\|CAB39622.1\| putative protein [Arabidopsis thaliana] emb\|CAB78121.1\| putative protein [Arabidopsis thaliana] gb\|AEE82823.1\| methyltransferase-like protein 1 [Arabidopsis thaliana]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	methyltransferase-like protein 1-like	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	65%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	65%
Blast2go	Tetracycline biosynthesis	00253	65%
Blast2go	Histidine metabolism	00340	65%
Blast2go	Tyrosine metabolism	00350	65%
Blast2go	Phenylalanine metabolism	00360	65%
Blast2go	Tryptophan metabolism	00380	65%
Blast2go	Benzoxazinoid biosynthesis	00402	65%
Blast2go	Selenocompound metabolism	00450	65%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	65%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	65%
Blast2go	Methane metabolism	00680	65%
Blast2go	Porphyrin and chlorophyll metabolism	00860	65%
Blast2go	Carotenoid biosynthesis	00906	65%
Blast2go	Phenylpropanoid biosynthesis	00940	65%
Blast2go	Flavonoid biosynthesis	00941	65%
Blast2go	Anthocyanin biosynthesis	00942	65%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	65%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	65%
Blast2go	Insect hormone biosynthesis	00981	65%
Blast2go	Biosynthesis of type II polyketide products	01057	65%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	65%
Blast2go	Metabolic pathways	01100	65%
Blast2go	Biosynthesis of secondary metabolites	01110	65%

Source	GOs	Term	Type	Identity
Blast2go	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	65%
Blast2go	methylation	GO:0032259	Biological Process	65%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	65%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	65%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ArgE/DapE/ACY1/CPG2/YscS, conserved site	IPR001261	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	MT-A70	IPR007757	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPF6

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 134 aas, putative chimeric sequence, your sequence is shorter than subject: 92 - 804

Fln protein: GKKYRISR*RQLLMDPSFIFLWVGDGVGLEQGRLCLKKWGFRRCEDICWVKTNKANPSPGLRHDSHTLFQHSKEHCLMGIKGRLGGVQMDI*

Protein Length: 93

Fln nts: ATGGGAAGAAATACAGAATCTCAAGATAGAGGCAATTGCTTATGGATCCATCTTTCATTTTCCTTTGGGTAGGGGATGGTGTGGGTCTTGAACAGGGTCGCCTTTGTCTTAAAAAGTGGGGATTTCGGAGGTGTGAAGATATTTGCTGGGTGAAGACAAATAAGGCAAACCCATCACCAGGCTTGCGTCATGATTCTCACACATTATTCCAGCATTCAAAGGAGCACTGCTTGATGGGCATAAAGGGGCGGTTAGGCGGAGTACAGATGGACATATAA___TTCATGCCAACATTGATACAGATATAATTATTGCTGAAGAACCTCCTCATGGATCAACTACAAAGCCCGAGGATCTGTATCGTATAATTGAACACTTTGCTTTGGGTCGTCGACGTCTAGAGCTCTTTGGTGAAGACCATAATATTCGTGCAGGTTGGCTTACTGTTGGCAAAGGGCTGACATCGTCAAACTTTAACATAGAGAGTTACACGAAGAACTTTTTTGACAAAGATGGGAAGCTTTGGCAAGGTGGAGCTGGCCGTAACCCGCCTCCTGATGCTCCTCACCTTGTTGGTACCTCGCCTGAGATAGAAAGTCTCCGACCAAAATCCCCACCACAAAAGAACCAACAGCAGCAGCAGGCAAATTCTGTCTCGCAAACTGCGGCAAATTCTACAAATAAAAAAACATCGGCCACCTCTCCAGGCCCTCCTCAAAATTCTCAAGCATCAGCCACTGCAACACCCATTACTGGATCGACTCAGGAAATTCAAGCATCCAATGCCTCGGCTACATTACCTGCATTGCCTGTTTCAGAAATTGCCAGGAGTGGAGGTTCTGCTCCAGTAATTGAACAGAGGCCAATTCCTATACTTCCCAGCACATCCAGAACATCAGGTATAGGATCAAGAGTTGGGTTAGAGGTTGAAGGTGGCATGGAGGATGAAAGGTTTTTGGATTCAGGGACACCTGGTACAATGGACTTGCAAAAATAAAATGAGTTTTCATTTGTGAGTGAGATGCGGATATTTTATGCATAGGCACTTCATGGAGATGTGGTTTATAAACGCCATCTTAATATCTGTACCTATTACTTTCAAAATATGAAGGCAAGATGGAAAGCTACTCATCTGTTGTGAAGTCAGAATGTTGGTAGGGGTTGGGTTCTGAAAGTAGAAACTTTTTGATTGGTTTAATTAAACGAGGGAATTTGCCTGGTTTCCCTTTTCCTTCCATTGCCTGCTATTTGATGCCTATACTAAGATTCGGTCTCTTTATTTGAAGATTCAAATTTCCATCGGTTAAATTATGTATTAAAATATCCTCACTTAACTTCAGTTTTGCAGAAGTGTAATTGTTTCAATTTTGTTTAATGTACATACTGTGTATTGATGTAAATATGGAAAGTAATAACTCAATTCATTCTTCAATTCCTTTCACCTCTCCTACTGTACTATCCGACTGCACGGGATAGAAGTTTTCAGTTATCTAATGAGTTGCATTTCTTAACATTTGTCTTTATTATTGAATACTTGATTCGT

Fln Alignment:

Contig7032___LMDPSFIFLWVGDGVGLEQGRLCLKKWGFRRCEDICWVKTNKANPSPGLRHDSHTLFQHSKEHCLMGIKG
B8LPF6______________LQTDGLIFLWV-TGRAMELGRECLELWGYRRIEELIWVKTNQLQRIIRTGRTGHWL-NHSKEHCLVGIKG

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
45	33	33	33		0.997753
46	33	33	33		0.997753
48	66		33		0.997452
393	16		83		0.994512
530	80		20		0.995493
547	80		20		0.995493
548		80	20		0.995493
549		80	20		0.995493
551	40		60		1.0
644		25	75		0.996473
645	25		75		0.996473
646		66		33	0.997452
647	66			33	0.997452
848	88	11			0.923564
852	88	11			0.923564
853			11	88	0.923564
859	88	11			0.923564
860			88	11	0.923564
861	88			11	0.923564
866	88			11	0.923564
867	88		11		0.923564
869		11		88	0.923564
870	11	88			0.923564
873	88	11			0.923564
874	11			88	0.923564
930		10	90		0.90298
931	90		10		0.90298
932	90			10	0.90298
933		10	90		0.90298
937		10	90		0.90298
939	90			10	0.90298
943	90	10			0.90298
944			90	10	0.90298
948		12	87		0.992554
950	87	12			0.992554
951	87			12	0.992554
952		12	87		0.992554
953	12		87		0.992554
1010	87	12			0.992554
1015	12			87	0.992554
1016		12	87		0.992554
1017	87		12		0.992554
1018			87	12	0.992554
1071		87		12	0.992554
1233		60	40		1.0
1398		20		80	0.995493
1430		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
629	640	CAG CAG CAG CAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain