SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7015

Length: 1166 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7015

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	fimbrin-like protein 2 [Arabidopsis thaliana] sp\|Q9FKI0.1\|FIMB2_ARATH RecName: Full=Fimbrin-like protein 2 dbj\|BAB09267.1\| fimbrin [Arabidopsis thaliana] gb\|AAK76454.1\| putative fimbrin protein [Arabidopsis thaliana] gb\|AAN13139.1\| putative fimbrin protei	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	fimbrin-like protein 2-like	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	pollen germination	GO:0009846	Biological Process	79%
Blast2go	pollen tube growth	GO:0009860	Biological Process	79%
Blast2go	actin cytoskeleton organization	GO:0030036	Biological Process	79%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	79%
Blast2go	actin filament binding	GO:0051015	Molecular Function	79%
Blast2go	cell wall	GO:0005618	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Membrane bound O-acyl transferase, MBOAT	IPR004299	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A879

Fln msg: your sequence is longer than subject: 244 - 134

Fln protein: MVNWKQASKPPIKMPFRKVENCNQVIRIGKQLKFSLVNVAGNDIVQGNKKLILAYLWQLMRYNMLQLLRNLRLRSSHKEISDLEIMNWANAKVKNTGRPDQSENSRDKSLANGIFLLELLSAVEPRVVNWYIVTKGENEEEKRLNATYIISVARKLGCSVFLLPEDIVEVNPKMILILVASIMLWSLTKQTSEDVGISDSENGSVTGSLSNLALDDSTSEASLPLDNGSESASEHSFEESRAE*

Protein Length: 245

Fln nts: GGATGGGTTCTGCTTGAAGTACTTGACAAAGTGGCCCCAGGG_-_ATGGTAAATTGGAAGCAAGCAAGCAAGCCTCCAATAAAAATGCCATTCAGGAAAGTAGAAAATTGTAATCAAGTAATCAGAATTGGAAAGCAACTGAAATTTTCACTTGTTAATGTGGCTGGGAATGACATTGTGCAAGGAAATAAAAAGCTCATTCTTGCATATTTGTGGCAATTGATGCGGTACAACATGCTTCAGCTGCTCAGAAATCTCAGGCTGCGTTCTAGTCATAAGGAGATATCGGATCTTGAGATAATGAATTGGGCAAATGCAAAAGTTAAAAATACAGGCAGACCTGACCAAAGCGAGAACTCAAGGGACAAAAGTCTTGCAAATGGAATATTTCTCCTTGAATTACTGAGTGCTGTGGAACCTAGGGTTGTGAACTGGTATATTGTCACAAAAGGCGAGAATGAGGAAGAAAAGAGACTGAATGCAACCTATATAATCAGTGTGGCAAGGAAGCTTGGTTGCTCAGTTTTCCTTCTACCTGAAGACATTGTTGAGGTTAATCCTAAAATGATACTGATATTGGTTGCAAGCATTATGCTTTGGAGTCTTACAAAACAAACCAGTGAAGATGTGGGAATTTCAGACAGTGAAAATGGAAGTGTAACCGGCAGTCTATCAAATCTTGCCCTTGATGATAGTACTTCAGAGGCTTCTTTGCCACTTGATAATGGAAGTGAATCGGCAAGTGAACATTCCTTTGAGGAGAGTAGAGCAGAGTAG___AGGTGATTAATGTTTAATTGATTTTGCTTTCGCCAAAAATGTTTCAAATTTTTTTGACTACAAATCATAAAGCTTGGCCATGGTTCTGGGCCTTGCTTGGAAAAACACACTACCCGGTAAGATATTTTTGTACCAATATTTGGAATCTCACATGGACTATGTAATCTAGTTCCAAAGAGTTCAACAAAATGTGTTTGAATTCCACAAAAGAAAAGGGAAATTCACTCAACTTTTGTAAAGTAACATGATCATCTTGCTGATCATTTTGCATATCGTTCAAGGCTGATTCTTATCACCACTAGGAGCCAGCAGATGATTAATGAGCACAGTAGTGAGTAAGGTGTAACTCATCTGGATATTGAACGATCCATAGTATTAATTGCTTTTTAAAC

Fln Alignment:

Contig7015___RDKSLANGIFLLELLSAVEPRVVNWYIVTKGENEEEKRLNATYIISVARKLGCSVFLLPEDIVEVNPKMILILVASIMLWSLTKQTSEDVGI--SDSENGSVTGSLSNLALDDSTSEASLPLDNG
D5A879______________KDKSLTNGIFFLELLTAVEPRVVSWNVVTKGETEQEKKLNATYIISVARKMGCSIFLLPEDIVEVNPKMILTLTASIMLWSLSNQTGEDTSTMSSELENGLASASISSVD-NDSASQASLPPDNG

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
140	83	16			0.994512
143		16		83	0.994512
145		16		83	0.994512
146	16	83			0.994512
346	80	20			0.995493
347	80		20		0.995493
349		20	80		0.995493
351	80			20	0.995493
354		20	80		0.995493
358		80	20		0.995493
359	80		20		0.995493
360		20	80		0.995493
361			80	20	0.995493
363	80			20	0.995493
366	75	25			0.996473
367	75			25	0.996473
368	75	25			0.996473
538	90			10	0.90298
540		10	90		0.90298
541	90			10	0.90298
595		10		90	0.90298
600	90	10			0.90298
604	10			90	0.90298
707			14	85	0.999981
710			14	85	0.999981
714	14	85			0.999981
721	85		14		0.999981
722		14		85	0.999981
723	85			14	0.999981
724	85		14		0.999981
726		25	75		1.0
727	12		87		0.999964
728	75	12		12	0.999931
729	75	12		12	0.999931
730		12	87		0.999964
731	12			87	0.999964
734	87	12			0.999964
736		87		12	0.999964
740	87			12	0.999964
744		12	87		0.999964
746	87	12			0.999964
1141	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
55	70	AAGC AAGC AAGC AAGC	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain