SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7002

Length: 1259 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene7002 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BX252847 Pinus pinaster differenciating xylem adult Pinus pinaster cDNA clone PP071F07, mRNA sequence.	-	-	0.0	99%
FL-Next	tr=TRAUCO; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	55%
Blast2go	TRAUCO [Pinus radiata]	-	-	5.94212e-11	61%

Source	InterPros	Term	Type	Identity
Sma3	B30.2/SPRY domain	IPR001870	-	-
Sma3	SPla/RYanodine receptor SPRY	IPR003877	-	-
Sma3	SPla/RYanodine receptor subgroup	IPR018355	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B3V288

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 69 aas, your sequence is shorter than subject: 189 - 412

Fln protein: MDPHHNEEEEYDEGLDDPAEQLGKRPLEGWDDSAEQQKRPLDHGSSCQVGVGGDKIGVGVGVGGEEEFEDHGPSEQEGMKEDQSDKSGYKDNASEDTVATERRNPNAPTRSASAAEDIITIEDEDDESRAGQHRTSEQKGNLLGPMRRKLGKRWGAILLGVLLLKWPTISIRSIRSNSDLARGGGRGA*

Protein Length: 190

Fln nts: ATTACTTCTACGCTGAAATTCCCTTCACATGATGGGGACAGGCGAAGTCGGATAACATAATCGTTTGTCTGCAATGCCATTTTCTGCACCAGGTTCTTTTAAATATGAGAAAACTAATATGACAATAGAATATTGAAGGCAATAAGGCAATAGAAATATAAACGTCTGTTGGATTGCTACGTGATTGCATACTATACTCTAGCTCACTGCTCA_-_ATGGATCCTCATCACAACGAGGAAGAGGAGTATGATGAGGGGTTGGATGATCCTGCAGAACAGCTTGGGAAACGTCCCCTTGAGGGGTGGGATGATTCTGCAGAACAGCAGAAACGTCCCCTTGATCACGGGTCATCTTGCCAAGTCGGTGTTGGTGGAGACAAGATCGGTGTTGGTGTTGGAGTTGGAGGAGAGGAAGAATTCGAAGACCATGGCCCAAGTGAACAGGAAGGCATGAAAGAGGATCAGAGCGACAAAAGTGGGTATAAGGATAACGCCTCAGAGGATACTGTGGCCACCGAAAGGAGAAACCCTAATGCCCCGACCAGATCAGCATCAGCAGCAGAAGATATTATCACAATTGAAGATGAGGATGATGAGTCACGGGCAGGGCAGCACAGAACATCGGAACAGAAGGGGAACTTACTGGGTCCAATGCGGAGGAAATTGGGTAAAAGGTGGGGGGCGATATTGTTGGGCGTCCTGTTACTAAAATGGCCCACGATCAGCATCAGAAGCATCAGAAGTAATTCCGATCTCGCACGAGGAGGAGGAAGAGGAGCATGATGAGGGTTCGGATGTATCTGCAGAACAGCAGAAACATCCCCTTGATCATAATCACGGGTCACCTCCGTCTGATACTTCTGGGGACAGGACCAATTGCCAAGTCGGTGTTGGAAGAGAGGAAGAATTCGAATAGCCAAATGAGGAAGACCATGGCCCAAGTGAACATGAAGGCATGACTGTATCAGATAGCAGATGATTAGGGTCTCAACCAGGATTTGGAGCTCATTCTTATCTATGCTTGTAAGACAACAAAAGTACTCTCTTACAGTTGATGCTATGCAGTGTGTTGTTGCATTATTATTCATATTTAGGACTTCCACTAGTTGATGTTTTGTATCAGAATCCCGGATTAGACTCTGCTCCATGCAAGTTGAGAGCATTTCTATTTTTAGACCACGATGCCATAGTAGATAACTTATAAGATAACTTGCTTAAATACGGATTGATGCATGAGAACTGATGTGATTATAAAATTATTC

Fln Alignment:

Contig7002___EEEEYDEGLDDPAEQLGKRPLEGWDDSAEQQKRPLDHGSSCQXXXXXXXXXXXXXXXGEEEFEDHGPSEQEGM--KEDQSDKSGYKDNASEDTVATERR
B3V288______________EEEEYDEGLDDSA-QVGV----GGDKI------------NCQVGVGVGR---------EEEFEYHGPSEPEGMNGEEDQSDESGYKDNASEDTVATKFR

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1051		88		11	0.923564
1075	77		22		0.999999
1077		75	25		1.0
1088			25	75	1.0
1089		75	25		1.0
1090		75		25	1.0
1091	75	25			1.0
1097		25	12		1.0
1098			87	12	0.992554
1131		16		83	0.994512
1132		16		83	0.994512
1134		16		83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain