SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6969

Length: 1166 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6969

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=F-box/LRR-repeat protein 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	f-box lrr-repeat protein 14	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	0.0	70%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q3EC97

Fln msg: Separated hits, possible frame ERROR between 562 and 564, your sequence is shorter than subject: 236 - 480

Fln protein: VVTLAVTHLVNCLISPGRGLACVLRKCQALQNLHLDMCVGVRDNDLISLAQQCPKLKTLSLRVPSDFSVPILMSNPLRLTDESLKAIAQNCSELESVSISFSDGDFPSSSSFSLAGIISLIEACPIRVLVLDHVYSFNDSGMEALCAAHFLEILELIQCQEVTDEGLQLVKHFPCLSVMRLCRCLGxxTDIGLKPLVASHKLQKLKVEDCPQISEKGTQGAAKVVSYKQDLSWIY*

Protein Length: 237

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTGTTAATTGCCTCATCAGCCCAGGTAGAGGACTTGCTTGTGTGCTTAGGAAATGTCAAGCTTTGCAAAATCTTCATCTTGATATGTGTGTTGGGGTAAGAGATAATGATTTGATAAGCCTTGCCCAGCAATGCCCCAAGCTGAAAACCTTGTCATTACGAGTTCCTTCAGATTTCTCCGTTCCTATCCTAATGAGCAATCCACTTCGGTTGACAGATGAGAGCTTGAAGGCCATTGCTCAGAATTGCTCTGAATTGGAATCAGTTTCAATATCATTCTCTGATGGAGACTTCCCTTCCTCATCTTCCTTCAGTCTTGCTGGCATAATTTCATTAATTGAAGCATGCCCTATCCGGGTTTTAGTTCTTGACCATGTTTATTCATTCAATGACAGTGGCATGGAGGCTCTTTGTGCAGCTCACTTTCTAGAGATCCTTGAACTTATACAATGCCAGGAGGTCACTGATGAAGGGCTGCAACTGGTCAAGCACTTCCCATGTTTGAGTGTCATGCGACTTTGTAGGTGCTTGGGTTTxxxTACAGATATTGGACTCAAGCCGCTAGTAGCTTCTCATAAATTGCAAAAGTTAAAGGTGGAAGATTGCCCTCAAATCTCAGAGAAAGGCACTCAAGGTGCTGCAAAGGTTGTCTCCTACAAGCAAGATCTCTCATGGATTTACTGATGGATGGTTGACCTTCATTTTCTGAGTCGTAGAATGGTCCATCCATGGATATCATTTGAAGAAATCAGTGCTTATTAACAGGCATTTGATCAATTAGAAGGACAACTTTTAGAAGGACAACTTTTATGAAAGCAGGGTAATTCTAGGTGTAGTGCTATATGTATTATGAACAAATCCTTTGTCTCAAATTTGCTTCCTGACAGAATATGCTTGGAGTGGCCTTTCGCATATATGTACATGCAAGGCTGTCTAGTGGGTAGCTCTTATCCATATGCTGGACTGTTTGAGCGTTTCAAGAGATCAGCTTTCCTTGTACATTTTCTATGTTTGATTTCAGGTTCATAATGTAAATACCTTTCCTGTTGAATTTTTTCCATTTCTCTGGAATCATTTCCCCGACCCCAGCCAAGAAAACTAGCTAGAAAAATCAAGTGAGTGCTTTGAATTGTTTTCATTCTA

Fln Alignment:

Contig6969___TLAVTHLVNCLISPGRGLACVLRKCQALQNLHLDMCVGVRDNDLISLAQQCPKLKTLSLRVPSDFSVPILMSNPLRLTDESLKAIAQNCSELESVXXXXXXXXXXXXXXXXXXXXXXXXEACPIRVLVLDHVYSFNDSGMEALCAAHFLEILELIQCQEVTDEGLQLVKHFPCLSVMRLCRCLGLxTDIGLKPLVASHKLQKLKVEDCPQISEKGTQGAAKVVSYKQDLSWIY
Q3EC97______________SLVELSLGNCIIAPGRGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQKASHLRSISLRVPSDFTLPLLNNITLRLTDESLSAIAQHCSKLESFKISFSDGEFPSLFSFTLQGIITLIQKCPVRELSLDHVCVFNDMGMEALCSAQKLEILELVHCQEVSDEGLILVSQFPSLNVLKLSKCLGVxTDDGMRPLVGSHKLELLVVEDCPQVSRRGVHGAATSVSFKQDLSWMY

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
206	14	85			0.993533
274	14		85		0.993533
363	83			16	0.994512
429			85	14	0.993533
430	83			16	0.994512
431		16	83		0.994512
499	20		80		0.995493
500		20	80		0.995493
501	20	80			0.995493
503			80	20	0.995493
531	75			25	0.996473
563		28		71	1.0
564		14	85		0.999981
565	15			38	1.0
566		15	15		0.999985
567	71	14		14	0.999974
568		85	14		0.999981
569	71	14		14	0.999974
570			78	14	0.999974
571	85			14	0.999981
572		14	14	71	0.999974
573	71	14	14		0.999974
574		14		85	0.999981
577		14	85		0.999981
582	85		14		0.999981
583	85			14	0.999981
584		14	85		0.999981
585	14	85			0.999981
587			85	14	0.999981
589	14			85	0.999981
713		11	88		0.999952
1026		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain