SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6953

Length: 1392 nt

Origin of reads: Inia v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6953

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein phosphatase 2C 2 [Arabidopsis thaliana] sp\|Q8RX37.1\|P2C02_ARATH RecName: Full=Probable protein phosphatase 2C 2; Short=AtPP2C02; AltName: Full=Protein phosphatase AP2C2 gb\|AAM13912.1\| putative protein phosphatase 2C [Arabidopsis thaliana]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	probable protein phosphatase 2c 25-like	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	73%
Blast2go	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	73%
Blast2go	cell part	GO:0044464	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9U3

Fln msg: W1: There is no M at the beginning,

Fln protein: IYTAASADCKNGLHCSREFSLGLRLLQIPFLADKCPKPLHKWQRPLMLDDPLQFPGLNAPSVAVEQPMEVNVEGFHYAVSCKKGKREFMEDTHKAIVNVLGDSKQAFFGVFDGHSGRNAAAFAAENIGQNILDAMLRMGNETEDILEQAVRDGYLTTDAEFLKQEVGSGTACVTAVIINGNLVVSNAGDCRAVISRDGASEALTCDHRAGREDERQRIENLNGIVDLRHGVWRVQGSLAVSRAIGDSHMKEWITAEPDTRKIEITSDCEFLILASDGLWDKVSNQEAVDIARPFCVQKQPNLTPLGGGPIAACKKLVELAVTRKSRDDVSVMIVQLPHFCIKKNSRVK*

Protein Length: 350

Fln nts: GATTGAATTTATACAGCAGCCTCCGCAGATTGTAAAAATGGCTTGCATTGTAGCAGGGAATTCTCCCTCGGTCTTCGGCTCCTGCAGATCCCCTTTTTGGCCGACAAGTGCCCTAAGCCTCTGCACAAGTGGCAACGCCCGCTGATGCTAGATGATCCGCTCCAGTTCCCGGGCCTCAATGCGCCGAGCGTGGCCGTGGAGCAGCCGATGGAGGTTAATGTGGAGGGTTTTCATTATGCGGTTTCGTGCAAAAAGGGCAAGCGAGAATTCATGGAAGATACCCACAAGGCCATTGTCAATGTTCTTGGCGATTCCAAACAGGCCTTCTTTGGCGTCTTTGATGGTCATAGCGGTCGGAACGCTGCAGCTTTCGCTGCCGAAAATATTGGGCAGAATATTCTGGACGCAATGCTCAGAATGGGAAACGAAACAGAGGACATTCTTGAACAGGCTGTTAGAGATGGCTACTTAACAACAGATGCAGAATTTTTGAAGCAGGAGGTTGGTAGCGGTACAGCTTGTGTAACTGCTGTCATTATAAATGGTAACTTAGTAGTTTCCAATGCTGGGGATTGCAGAGCAGTGATTAGCAGAGACGGTGCTTCGGAAGCCCTTACATGCGATCATCGCGCTGGAAGGGAGGACGAGCGGCAACGGATAGAGAATTTGAATGGAATTGTGGACCTACGCCACGGAGTTTGGCGAGTTCAGGGATCCCTGGCAGTATCTAGGGCAATAGGCGATTCACACATGAAAGAGTGGATAACAGCTGAACCAGACACCAGAAAGATTGAAATAACATCTGATTGCGAGTTTTTAATTTTGGCATCAGATGGGTTGTGGGATAAAGTTAGTAATCAAGAAGCAGTGGATATCGCCAGGCCTTTCTGTGTTCAGAAGCAACCTAATTTGACACCATTAGGAGGCGGCCCCATCGCTGCCTGTAAAAAGCTTGTAGAGTTAGCAGTAACCAGAAAATCCAGGGATGATGTGAGTGTGATGATAGTACAACTCCCACATTTTTGCATAAAAAAGAATTCCAGAGTGAAGTGA___GGTGGGGTGGGACTATTGTCAAAGGATTCTTGACTAACAACCATTTAACCCAACCTGGTTGTTACCCTTTAAAAGGACCACATTATATTGTCGATGATCAAGCAGTGGGAACGGGGCCTCTCGAGTCTTTCGTCCTTTTCTGTAAAAAATGATACACCGACATTCGCTTCTGTACAGGACTGCAGATCATCCAATTTTAAATTTTTAAATATCTTTTGCGTAATCCCATAATTATATAATAAGTTGATTGTTGTAATAGGAAAAATAGTTTGATGAACAAAGTCAATTGATGAATTGAATTGATTATATAAAGTTAATTGATATAATGAAATTGAAGGT

Fln Alignment:

Contig6953___FLADKCPKPLHKWQRPLMLDDPLQFPGLNAPSVAVEQPMEVNVEGFHYAVSCKKGKREFMEDTHKAIVNVLGDSKQAFFGVFDGHSGRNAAAFAAENIGQNILDAMLRMGNETEDILEQAVRDGYLTTDAEFLKQEVGSGTACVTAVIINGNLVVSNAGDCRAVISRDGASEALTCDHRAGREDERQRIENLNGIVDLRHGVWRVQGSLAVSRAIGDSHMKEWITAEPDTRKIEITSDCEFLILASDGLWDKVSNQEAVDIARPFCVQKQPNLTPLGGGPIAACKKLVELAVTRKSRDDVSVMIVQLPHFCIKK
D5A9U3______________FTTDNSPSPLLKRKRPQRLDVPLQSLGLNAPWVAVEQPMEVNVEGFHYAVSCKKGRREFMEDTHKAIANVLGDSKQAFFGVFDGHSGRKAAAFAAENMGQNILDAMLGMEEETEDILEQAVRAGYLKTDAEFLKQEVGSGAACVTALIINGNLVVSNAGDCRAVISRDGAAEALTCDHRAGREDERQRIENLNGIVDLRHGVWRVQGSLAVYRAIGDSHMKQWITSEPDNRKIEITSDCEFLILASDGLWDKVSNQEAVDIARPFCVQKQPNLTPLGGGPIAACKKLAEIAVTRKSPDDVSVMIVQLRHFGMKE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1059		33		66	0.997452
1061	33		66		0.997452
1136	57		42		1.0
1148		33		66	1.0
1149			66	33	1.0
1186	40			60	1.0
1202	80		20		0.995493
1234			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain