SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6932

Length: 3140 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene6932
CGTCGTGACCTTGGCTGTCACTCAATATTTGCTTGGAAGGAGGGCAAGGAATCCGATTACTATTCCTTGCTGTGTTCCATCGCCTTCCCTTTTTAAACCCACCTGTTGCCCGCTGCTTTTACCTGCACTCCCATATCTGGTTGCCCACCACATGAATTCTTTCGGTCTCAAAGCTCGAGTCTTTTAATATTGGATGCCCATGACCAGAAATTGGCTGCGGTAAAACAAGGAACCGGTCACAGAGCTACCTAATCTCTTTTAATTGCCGCCCTGCCCTTTCTACCCACCTGGTCGAGGATTTTCAAGAGAGGAAAAGGAAGGTCCAGTTCGCCTGCCACAGTTTTCTTCTCGAAGGTGGAGAGAATGTCAGGACGACCTGCAATGGAGTTGTTGCGCTCCCATTTATCGAGAGTCAGGATTCCAGAGCCGTCTAATCGTATATACAAGGAGGAGTGCTGCGTATCTTTTGATACTCCGAAGTCAGAGGGAGGACTTTTCATCGACTTAAATTCATTTTTAGCATTTGGAAAGGACTCGGTGTTTTGGAACTACAAGAAAAGTGGAAATCCAGTTTACTTGCACATCAAGTCAACTAAAAAGCCTGTCAGTGAAGATAGGCCTTTCAAGAAGCCAACGCTTCTAGCAATAGGTATTGATGGGGGCTTTGAAAACCGAGAGCAGGAGTTTGAAGATTCATATAAGATTGTCATATTGCCTGAAAATGTTACACTTCCATTCCCTTCGGTAGAACTGCCAGAAAAGGTCAGATTATCAGTTGATGGTGTTTTGTCAGCTGTGGGCGCTGAGCGCAAAGAACAGGTTGCAGCTTGGGTAGATGATAAGAAGCAAGTTAGTGCATATGCAATGAACTTGCAACAGATTGATAATGGTGTCACAGTTCCTCCGTCTGGTTGGAAGTGTGCAAAGTGTGACAAGGTCGAAAATTTGTGGCTCAATCTTACAGATGGCATGATTCTTTGTGGGAGAAAGAATTGGGATGGAACTGGAGGCAATGATCATGCTGTTGAGCATTACAAAGAAACGAAGTACCCTTTAGCAGTAAAGCTTGGTACCGTCACGGCAGATTTAGAAACTGCAGATGTCTATTCTTATGCTGAGGATGAAACCGTTGAAGATCCCCTGTTAGCTCAACATTTATCATTTTTTGGTATTGACTTCTCATCTTTGAAAAAGACGGAGTTGACTACCGCTGAAAAAGAACTGGATCAGAATACAAACTTTGATTGGAATCGTATTCAGGAAAGTGGCAAGGAATCAGAGCCTCTATTTGGGCCTGGTTATACAGGACTTATCAATCTTGGAAACAGCTGTTACTTGGCCTCTATCATGCAAACAGTATTCTCCACAAGAGATTTTAGTTTACGTTATTTTGGAACTCAAAAATTGGATGAAGCTTTTGAAGGGGCTCCTGCAGATCCAACTGTTGACTTGAATATGCAGCTGGTGAAACTTGGACATGGCCTACTCTCTGGCAAGTATTCAAATCCTGTTAAAGAGGCTTATGATGCAGATGACTGTGAAAATGCAACCTTGAAACCTAGGCAAGAAGGCATACCACCTCGTATGTTCAAGGCACTTATTGGCACTGGTCATCCTGAGTTCTCTAGTACTAGACAACAGGATGCACTGGAGTTCTTTCAACATTTACTTGACCATGTTGAGCGAAGCAATGCGGGAAAACCTCAATCGGATCCTTCTAGATGTTTTAAGTTCTGCGTTGAAGAGCGAATTCTTTGCTCATCTGGGAAAGTTTCATACAATAGAAGAATTGACAATGTTCTTTCTCTGAATATTCCTTTGCATGCCGCTATCAATAAGGATGAGGTAACAGCATTTGAGAAGAAAAAAGCAGAGAAAGAATTAGCAGGAGAGAAATTTAACAGTGAGGAAATTGTTCGTCCAAGAGTACCATTATCAGCATGTATAGCGAGTTTCTCAGCACCAGAAGAGGTGCATGATTTTTATAGCACTGCACTGAATGATAAGACGACAGCAGTTAAAACTGGTGGTCTAGCAACATTTCCTGATTATTTGGTACTACATATGCGCAAGTTTGTCATGGAGGCTGGTTGGGTTCCTAAAAAACTTGATGTTTTTATTGATGTTCCTGACACAATAGATATCAGCCATATGCATAGCAAAGGTTTGCAACCAGGAGAGGAGCTACTACCCGAAAATGTTCAGAGTGGGCCTTCAGCCAGTGAACCTATTGTGTCACAGCTTGCAGCCATGGGTTTTCCTCGTCTTTATTGTGAAAAAGCTGCAATCAATACCTCAAATACAGGAATTGAGGATGCAATGAGTTGGCTTCTAAGCCACATGGAGGACCCAGATATTAATTCACCTATATCCACTGGAAGTAAAAATAATACAAAGCTGATTCCACCCGTTGATGAAGAACTTGTGGATACTCTTGTCGGATTTGGATTTGAAGCAGATGTTGCTCGAAAAGCATTAAGAGCCACAAGTGGTGATATTGAGAGAGCAGCTGAGTGGATCTTTTCTCGGCCAGAAGATTCTGTTGGCATGGACTTAGACGTCAATTCTAACAGTGCTCCTAGCACATCTGACCAGGCATTACCAGATGGAGAAGGAAAATACAAGCTTATGGCATTTGTAAGTCACATGGGCACGTCTACTCAGTGTGGACACTACGTAGCACATATACTTAAAGAAGGAAGATGGGTCATTTTCAATGACTGTAAAGTCGCAGTTTCATCTGAACCCCCCAAGGATATGGGATACCTGTACTTTTTTGAACGTGTTCATGGACATGCTGGAACAGCTTAGGTTGAGAACAACACATTTCGTTTTCTTAGTCAGTGTGCATTTGGAAAGAGTGAGGGTTTGCCTTTCCCAACACCTTGAAGCAGTCACGGCGGAATCTTGTGTACATGAAGAGCCAATTATTTTTTTTGTGGGATTTCATTGTGACGAGCTACTTCTCTTACATTACGGGTGATTTTCAATTGGCAATTATAAAGTCTTGGGAACCAGTCTAAATTTCATTCAATTAATGATCACTATTTGGTAGCAGTTCGAGTAGAGTGTTAATTTCTATGTATTTTTCAGGGTAAGCAGTCCGAGAAAGTGTCAAGTCCTATGATTTTTTGAAAGGT

Ace file of the UniGene sp_v2.0_unigene6932 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase (Fragment) n=3 Tax=Vitis vinifera RepID=E0CSV0_VITVI	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	ubiquitin carboxyl-terminal hydrolase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin thiolesterase.	EC:3.1.2.15	-	0.0	80%
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Omega peptidases.	EC:3.4.19.-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	80%
Blast2go	root hair elongation	GO:0048767	Biological Process	80%
Blast2go	protein deubiquitination	GO:0016579	Biological Process	80%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	80%
Blast2go	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	80%
Blast2go	omega peptidase activity	GO:0008242	Molecular Function	80%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	80%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	ubiquitin-specific protease activity	GO:0004843	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, UBP-type	IPR001607	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Ubiquitinyl hydrolase	IPR016652	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7V4

Fln msg: your sequence is longer than subject: 816 - 219

Fln protein: MSGRPAMELLRSHLSRVRIPEPSNRIYKEECCVSFDTPKSEGGLFIDLNSFLAFGKDSVFWNYKKSGNPVYLHIKSTKKPVSEDRPFKKPTLLAIGIDGGFENREQEFEDSYKIVILPENVTLPFPSVELPEKVRLSVDGVLSAVGAERKEQVAAWVDDKKQVSAYAMNLQQIDNGVTVPPSGWKCAKCDKVENLWLNLTDGMILCGRKNWDGTGGNDHAVEHYKETKYPLAVKLGTVTADLETADVYSYAEDETVEDPLLAQHLSFFGIDFSSLKKTELTTAEKELDQNTNFDWNRIQESGKESEPLFGPGYTGLINLGNSCYLASIMQTVFSTRDFSLRYFGTQKLDEAFEGAPADPTVDLNMQLVKLGHGLLSGKYSNPVKEAYDADDCENATLKPRQEGIPPRMFKALIGTGHPEFSSTRQQDALEFFQHLLDHVERSNAGKPQSDPSRCFKFCVEERILCSSGKVSYNRRIDNVLSLNIPLHAAINKDEVTAFEKKKAEKELAGEKFNSEEIVRPRVPLSACIASFSAPEEVHDFYSTALNDKTTAVKTGGLATFPDYLVLHMRKFVMEAGWVPKKLDVFIDVPDTIDISHMHSKGLQPGEELLPENVQSGPSASEPIVSQLAAMGFPRLYCEKAAINTSNTGIEDAMSWLLSHMEDPDINSPISTGSKNNTKLIPPVDEELVDTLVGFGFEADVARKALRATSGDIERAAEWIFSRPEDSVGMDLDVNSNSAPSTSDQALPDGEGKYKLMAFVSHMGTSTQCGHYVAHILKEGRWVIFNDCKVAVSSEPPKDMGYLYFFERVHGHAGTA*

Protein Length: 817

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTTGCTTGGAAGGAGGGCAAGGAATCCGATTACTATTCCTTGCTGTGTTCCATCGCCTTCCCTTTTTAAACCCACCTGTTGCCCGCTGCTTTTACCTGCACTCCCATATCTGGTTGCCCACCACATGAATTCTTTCGGTCTCAAAGCTCGAGTCTTTTAATATTGGATGCCCATGACCAGAAATTGGCTGCGGTAAAACAAGGAACCGGTCACAGAGCTACCTAATCTCTTTTAATTGCCGCCCTGCCCTTTCTACCCACCTGGTCGAGGATTTTCAAGAGAGGAAAAGGAAGGTCCAGTTCGCCTGCCACAGTTTTCTTCTCGAAGGTGGAGAGA_-_ATGTCAGGACGACCTGCAATGGAGTTGTTGCGCTCCCATTTATCGAGAGTCAGGATTCCAGAGCCGTCTAATCGTATATACAAGGAGGAGTGCTGCGTATCTTTTGATACTCCGAAGTCAGAGGGAGGACTTTTCATCGACTTAAATTCATTTTTAGCATTTGGAAAGGACTCGGTGTTTTGGAACTACAAGAAAAGTGGAAATCCAGTTTACTTGCACATCAAGTCAACTAAAAAGCCTGTCAGTGAAGATAGGCCTTTCAAGAAGCCAACGCTTCTAGCAATAGGTATTGATGGGGGCTTTGAAAACCGAGAGCAGGAGTTTGAAGATTCATATAAGATTGTCATATTGCCTGAAAATGTTACACTTCCATTCCCTTCGGTAGAACTGCCAGAAAAGGTCAGATTATCAGTTGATGGTGTTTTGTCAGCTGTGGGCGCTGAGCGCAAAGAACAGGTTGCAGCTTGGGTAGATGATAAGAAGCAAGTTAGTGCATATGCAATGAACTTGCAACAGATTGATAATGGTGTCACAGTTCCTCCGTCTGGTTGGAAGTGTGCAAAGTGTGACAAGGTCGAAAATTTGTGGCTCAATCTTACAGATGGCATGATTCTTTGTGGGAGAAAGAATTGGGATGGAACTGGAGGCAATGATCATGCTGTTGAGCATTACAAAGAAACGAAGTACCCTTTAGCAGTAAAGCTTGGTACCGTCACGGCAGATTTAGAAACTGCAGATGTCTATTCTTATGCTGAGGATGAAACCGTTGAAGATCCCCTGTTAGCTCAACATTTATCATTTTTTGGTATTGACTTCTCATCTTTGAAAAAGACGGAGTTGACTACCGCTGAAAAAGAACTGGATCAGAATACAAACTTTGATTGGAATCGTATTCAGGAAAGTGGCAAGGAATCAGAGCCTCTATTTGGGCCTGGTTATACAGGACTTATCAATCTTGGAAACAGCTGTTACTTGGCCTCTATCATGCAAACAGTATTCTCCACAAGAGATTTTAGTTTACGTTATTTTGGAACTCAAAAATTGGATGAAGCTTTTGAAGGGGCTCCTGCAGATCCAACTGTTGACTTGAATATGCAGCTGGTGAAACTTGGACATGGCCTACTCTCTGGCAAGTATTCAAATCCTGTTAAAGAGGCTTATGATGCAGATGACTGTGAAAATGCAACCTTGAAACCTAGGCAAGAAGGCATACCACCTCGTATGTTCAAGGCACTTATTGGCACTGGTCATCCTGAGTTCTCTAGTACTAGACAACAGGATGCACTGGAGTTCTTTCAACATTTACTTGACCATGTTGAGCGAAGCAATGCGGGAAAACCTCAATCGGATCCTTCTAGATGTTTTAAGTTCTGCGTTGAAGAGCGAATTCTTTGCTCATCTGGGAAAGTTTCATACAATAGAAGAATTGACAATGTTCTTTCTCTGAATATTCCTTTGCATGCCGCTATCAATAAGGATGAGGTAACAGCATTTGAGAAGAAAAAAGCAGAGAAAGAATTAGCAGGAGAGAAATTTAACAGTGAGGAAATTGTTCGTCCAAGAGTACCATTATCAGCATGTATAGCGAGTTTCTCAGCACCAGAAGAGGTGCATGATTTTTATAGCACTGCACTGAATGATAAGACGACAGCAGTTAAAACTGGTGGTCTAGCAACATTTCCTGATTATTTGGTACTACATATGCGCAAGTTTGTCATGGAGGCTGGTTGGGTTCCTAAAAAACTTGATGTTTTTATTGATGTTCCTGACACAATAGATATCAGCCATATGCATAGCAAAGGTTTGCAACCAGGAGAGGAGCTACTACCCGAAAATGTTCAGAGTGGGCCTTCAGCCAGTGAACCTATTGTGTCACAGCTTGCAGCCATGGGTTTTCCTCGTCTTTATTGTGAAAAAGCTGCAATCAATACCTCAAATACAGGAATTGAGGATGCAATGAGTTGGCTTCTAAGCCACATGGAGGACCCAGATATTAATTCACCTATATCCACTGGAAGTAAAAATAATACAAAGCTGATTCCACCCGTTGATGAAGAACTTGTGGATACTCTTGTCGGATTTGGATTTGAAGCAGATGTTGCTCGAAAAGCATTAAGAGCCACAAGTGGTGATATTGAGAGAGCAGCTGAGTGGATCTTTTCTCGGCCAGAAGATTCTGTTGGCATGGACTTAGACGTCAATTCTAACAGTGCTCCTAGCACATCTGACCAGGCATTACCAGATGGAGAAGGAAAATACAAGCTTATGGCATTTGTAAGTCACATGGGCACGTCTACTCAGTGTGGACACTACGTAGCACATATACTTAAAGAAGGAAGATGGGTCATTTTCAATGACTGTAAAGTCGCAGTTTCATCTGAACCCCCCAAGGATATGGGATACCTGTACTTTTTTGAACGTGTTCATGGACATGCTGGAACAGCTTAG___GTTGAGAACAACACATTTCGTTTTCTTAGTCAGTGTGCATTTGGAAAGAGTGAGGGTTTGCCTTTCCCAACACCTTGAAGCAGTCACGGCGGAATCTTGTGTACATGAAGAGCCAATTATTTTTTTTGTGGGATTTCATTGTGACGAGCTACTTCTCTTACATTACGGGTGATTTTCAATTGGCAATTATAAAGTCTTGGGAACCAGTCTAAATTTCATTCAATTAATGATCACTATTTGGTAGCAGTTCGAGTAGAGTGTTAATTTCTATGTATTTTTCAGGGTAAGCAGTCCGAGAAAGTGTCAAGTCCTATGATTTTTTGAAAGGT

Fln Alignment:

Contig6932___MHSKGLQPGEELLPENVQSGPSASEPIVSQLAAMGFPRLYCEKAAINTSNTGIEDAMSWLLSHMEDPDINSPISTGSKNNTKLIPPVDEELVDTLVGFGFEADVARKALRATSGDIERAAEWIFSRPEDSVGMDLDVNSNSAPSTSDQALPDGEGKYKLMAFVSHMGTSTQCGHYVAHILKEGRWVIFNDCKVAVSSEPPKDMGYLYFFERVHGHAGTA
D5A7V4______________MHSKGLQPGEELLPENVQRGPSASEAIVSQLAAMGFPRLHCEKAAINTSNTGVEDAMNWLLSHTEDPDIDTPISTGRQNDTKLKPPVDEGLVDTLVGFGFEADVARKALRATGGIIERAAEWIFSQPQDSIGMDLDASSNSAPSTSDQALPNGEGKYKLMAFVSHMGTSTQCGHYVAHILKEGRWVIFNDCKVAASCEPPKDMGYLYFFERIHGDAGRA

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
3120		20		80	0.995493
3121		20	80		0.995493
3122	80	20			0.995493
3123		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain