SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6913

Length: 903 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6913

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NADH-ubiquinone oxidoreductase chain 4 n=35 Tax=Magnoliophyta RepID=NU4M_ARATH	-	-	86%
FL-Next	sp=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic 2; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). Plastid; Chloroplast.	-	-	34%
Blast2go	nadh dehydrogenase subunit 4	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	88%
Blast2go	Metabolic pathways	01100		0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	88%
Blast2go	ATP synthesis coupled electron transport	GO:0042773	Biological Process	88%
Blast2go	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	88%
Blast2go	mitochondrial respiratory chain complex I	GO:0005747	Cellular Component	88%
Blast2go	integral to membrane	GO:0016021	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	-
Sma3	NADH:ubiquinone oxidoreductase	IPR003918	-	-
Sma3	NADH-quinone oxidoreductase, chain M/4	IPR010227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C4XUV7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 120 aas, your sequence is shorter than subject: 301 - 499

Fln protein: MGEREASKK*ESEDGKYMHG*WDNDKGHERLAIPGRSRMMRKYHVRFSEKGVATHWSFFLTYTRSSGATPYSPITIGVWGSRQRKIRAAYQFPPYTSLGSVLMLLAIPLILSQTGTTDLQILSTTEFSERRQIFPWIASPAPFPVKVPMVPVHIWLPEAHVEAPTAGSVISAGIPSKLGTYGFSRFPIPMFPEATLCSTPFIYTLSVIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGFLYDRHKTRLVKYYGGLVSTMPNFSIYYI

Protein Length: 302

Fln nts: ATGGGAGAGCGAGAAGCAAGCAAAAAATGAGAAAGTGAAGACGGGAAGTACATGCATGGATAGTGGGATAATGACAAGGGCCACGAACGACTAGCTATCCCGGGGCGGAGCCGTATGATGCGGAAGTATCACGTACGGTTCTCTGAGAAGGGAGTGGCTACCCACTGGAGCTTTTTCTTGACCTACACCCGAAGCTCTGGGGCTACCCCTTACTCTCCTATCACTATAGGGGTATGGGGTTCGAGACAAAGAAAGATCAGGGCAGCATATCAGTTTCCCCCATACACCTCACTCGGATCTGTTCTTATGCTATTAGCTATTCCGTTGATTCTCTCCCAAACAGGAACCACCGATTTACAAATCTTATCAACCACAGAATTCAGTGAGCGGCGCCAAATCTTTCCATGGATTGCTTCTCCCGCTCCTTTCCCCGTCAAAGTGCCTATGGTACCAGTTCATATCTGGTTACCCGAAGCTCATGTAGAGGCACCTACGGCTGGATCCGTCATTTCGGCAGGAATTCCTTCAAAATTGGGAACCTATGGGTTTTCGAGATTTCCCATACCCATGTTTCCCGAAGCGACACTTTGTTCCACTCCCTTCATTTATACTCTAAGCGTGATTGCTATTATATATACTTCCTTGACCACTCTGAGACAAATCGATCTTAAGAAGATTATTGCCTACTCCTCAGTAGCCCATATGAATTTTGTGACTATTGGTATGTTCAGTCTGAACATACAGGGAATTGGAGGTAGCATTCTACTGATGTTAAGCCATGGACTGGTTTCTTCAGCCCTTTTTCTATGTGTCGGTTTTCTATATGACCGGCATAAGACTCGACTTGTTAAATATTATGGAGGTTTAGTAAGCACCATGCCGAATTTCTCTATCTATTACATT

Fln Alignment:

Contig6913___ITIGVWGSRQRKIRAAYQFPPYTSLGSVLML---LAIPLILSQTGTTDLQILSTTEFSERRQIFPWIASPAPFPVKVPMVPVHIWLPEAHVEAPTAGSVISAGIPSKLGTYGFSRFPIPMFPEATLCSTPFIYTLSVIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGFLYDRHKTRLVKYYGGLVSTMP
C4XUV7______________LLLSMWGGK-RRLYSATKFLLYTAGGSIFILMGALSMGLYGSHGPTFDFELLAKKDYPITLEILLYLGFLIAYAIKLPIFPLHTWLPDTHGEAHYSTCMLLAGVLLKMGGYGLIRINMELLPHAHSLFSPWLIIIGAVQIIYAALTSMGQRNLKRRIAYSSISHMGFVIIGIGSMTYTGLNGAILQMISHGLIGAALFFLVGTSYDRIRTLFLDEMGGIAIPIP

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
594		69		30	1.0
621		45		54	1.0
644		70		30	1.0
645		60		20	0.999999
650	90		10		0.90298
651		90		10	0.90298
660	90		10		0.90298
669		80		20	0.999996
686		20		80	1.0
692		28		72	1.0
705		37		62	1.0
710		29		70	1.0
711		33		66	1.0
729		23		76	1.0
894		10		90	0.90298
896	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain