SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6906

Length: 1287 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6906

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease [Arabidopsis thaliana] gb\|AAU05486.1\| At1g33360 [Arabidopsis thaliana] gb\|AAU95429.1\| At1g33360 [Arabidopsis thaliana] gb\|AEE31587.1\| ATP-dependent Clp protease [Arabidopsis thaliana]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	71%
Blast2go	atp-dependent clp protease atp-binding subunit -like	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	85%
Blast2go	peptidase activity	GO:0008233	Molecular Function	85%
Blast2go	ATPase activity	GO:0016887	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Clp protease, ATP-binding subunit ClpX	IPR004487	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6GVW6

Fln msg: your sequence is shorter than subject: 288 - 601

Fln protein: GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVSISEKGTRKNPRGDHIQIDTKDILFICGGAFVDLEKTIAERRQDASIGFGAPVRTNMRSSGLTNATITSSLLELAESSDLVAYGLIPEFVGRFPVFVSISALSEDQLIKVLMEPRNALGRQYRKLFSMDNVKLHFTEGAMRQIAKKALAKNTGARGLRSILENLLTEAMFEIPEATTGQNRIDAVVVDEEVLSSTKSEGKVAKILRGVGALEQYLLEQGKDSSVVIDAPQEGEAESELTARAAVM*

Protein Length: 289

Fln nts: GGAATTGTTTATATTGATGAAGTTGATAAAATCACAAAGAAGGCTGAAAGCTTGAATATAAGTAGGGACGTGTCTGGAGAGGGTGTTCAGCAAGCATTGCTAAAAATGCTGGAAGGAACAGTTGTAAGTATTTCAGAAAAGGGAACTCGCAAGAATCCTCGTGGTGATCACATTCAGATAGATACAAAGGATATTCTTTTTATTTGTGGTGGGGCATTTGTGGACCTGGAGAAAACAATTGCAGAAAGACGACAAGATGCTTCAATTGGCTTTGGAGCACCTGTACGTACAAATATGAGGTCGAGTGGCCTAACAAATGCAACAATTACATCATCATTACTGGAATTGGCTGAGAGTAGTGACTTGGTTGCTTATGGCTTGATACCAGAGTTTGTTGGTCGGTTTCCTGTTTTTGTGAGCATTTCAGCTTTAAGTGAAGACCAACTTATTAAGGTTCTCATGGAGCCTAGAAATGCACTTGGCAGGCAGTATAGAAAATTGTTTTCTATGGACAATGTTAAGTTGCACTTCACAGAAGGAGCAATGCGACAGATTGCAAAGAAAGCATTGGCTAAGAATACTGGAGCCCGTGGTTTACGTTCCATCCTTGAAAACCTTTTGACTGAAGCCATGTTTGAGATTCCAGAGGCAACAACAGGACAAAATAGAATTGATGCCGTTGTCGTTGATGAAGAGGTGCTATCGTCTACAAAATCAGAGGGAAAAGTGGCCAAGATCCTTCGTGGAGTAGGTGCATTGGAGCAGTATCTTTTAGAACAAGGAAAGGATTCATCGGTTGTCATTGATGCCCCTCAGGAGGGAGAAGCAGAGTCTGAGCTTACTGCGAGAGCTGCTGTGATGTAA___TTGTTTGGCTTGAAGAAGATAAGCTAATGAGAGTTAATGGAAAGAGCCATCCATTTTACACCATACAAAGAAGAACTGGAAATTGTAATCTATGCATTATTATCATTGGCCAACAATGTTGCCTTGCAACTGCTATTGTTGGCTCCAGTGAAAACCCTTCTGGGTTGGGTGCAACATATAGGACTAGCAGAAAATTAATGTACAGAAACTTGCTAGAGCTGTGCTCTTGGTTGTAAGCACAAAACAGATGCGATTGTAGTTTCATCCATTCATTTAATGTGTAACAGTCATCTTCATTTGATTATATCATCCAAGATGTGAGGCATGCCATGAGCATTATATCTCAACATAGGCAAAAGTTGCACCAGAGAAGCTGCTGTTGTACTAGCCAATGTGTTTTCTTCTATTTTCTGTTTTCTTCTA

Fln Alignment:

Contig6906___GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVSISEKGTRKNPRGDHIQIDTKDILFICGGAFVDLEKTIAERRQDASIGFGAPVRTNMRSSGLTNATITXXXXXXXXXXXXVAYGLIPEFVGRFPVFVSISALSEDQLIKVLMEPRNALGRQYRKLFSMDNVKLHFTEGAMRQIAKKALAKNTGARGLRSILENLLTEAMFEIPEATTGQNRIDAVVVDEEVLSSTKSEGKVAKILRGVGALEQYLLEQGKDSSVVIDAPQEG-----EAESELTARAAVM
F6GVW6______________GMVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQDSSIGFGAPVRANMRTGGLTNAVVTSSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLVKVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRQIAKKAMVKNTGARGLRALLESILTEAMYEIPDVKTGKDRVDAVVVDEESVGSVNAPGCGGKILRGDGALDCYLAET-KLKDPVESGGEAGDGELQEAESEVSSRAMSM

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
322	50		50		1.0
558	87			12	0.992554
662	85		14		0.993533
663	83			16	0.994512
664	83	16			0.994512
665	83		16		0.994512
670	83	16			0.994512
674	83	16			0.994512
678	16	83			0.994512
679		16	83		0.994512
681		16		83	0.994512
682	16		83		0.994512
770			20	80	0.995493
772		20		80	0.995493
773			20	80	0.995493
774	80			20	0.995493
777	62	25	12		1.0
778		87		12	0.992554
779	62		12	25	1.0
780	75		12	12	0.975346
781	12		75	12	0.975346
782		12	87		0.992554
783	75	25			1.0
784	62	25		12	1.0
785	75		12	12	0.975346
786		12	62	25	1.0
787	12	12	75		0.975346
788	87			12	0.992554
789		12		87	0.992554
791		87	12		0.992554
822	87			12	0.992554
823			85	14	0.993533
824	87			12	0.992554
825	87	12			0.992554
1005		10	90		0.999898
1148	90		10		0.90298
1187	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain