SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6904

Length: 2639 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene6904
TCAGGGGAGTACAGAGATGGTTGATAGAGAGGGTTCTTCAGAGCACCAGAACATACGTAAACACTAGGGGGTCTGGTCACCGTTGCAGTGCCCAAGCGCTTTCTGTTCCTCCATTCTCTGCTCCGGAGGCTCAAAATGATGGCTTCCTGACCAAATCGCGACCACTGGGACTCCAACATCAGATTGGCCACAATTGAGCAAACTTTTTGGTTTTAATGTCCCTGATTGAAGCCAGGGCCTAAAGTGATTAAAACTAAGGAATTGTCAATCTCGTTCCAGCTTGGGTAGTCTTAATGTGCTGAAGGCAGAGCTGTTCTTACTGAATATTATTGCAAGTGGAATATACCAGGAATAAAGACAAGGGTTAAGAATGGCTGCCGCTCTTGTTGAGAGGGCTACCAGTGACATGTTGGTTAGCCCTGATTGGGCAATGAACATTGAGATTTGTGATGTTCTTAATAATGATCCAGGACAAGCAAAGGATGTCATTAAATCAATCAAGAAGCGCATCGGAAATAAGAACCCCAAGATCCAGATTCTTGCACTGACTCTGTTAGAGACTCTTATAAAAAATTGTGGCGATAATGTTCATCAACAAGTAGCTGAACGAGATGTACTGCATGAAATGGTCAAGATCGTAAAGAAAAGGCCAGATTTAAATGTAAGAGAAAAAATATTGGTCCTGTTAGATACGTGGCAGGAAGCCTTTGGGGGTCCAAGGGGAAAATATCCACAATATTACTCTGCATACAATGATTTACTGCGTGCAGGAGTAGAATTTCCACCACGTCCAGAGAGTTCTGCTCCAATATTCACACCTCCGCAGACACAACCGATAACTTATCCGTCTCAGACCTATGGATCTCCAGACTATGAAAATGAAGCAGTTGAGGCATCCCTGGCATCTGATCTTCCTGGTCTTAGCCTGACAGAAATTCAGAATGCTCGTGATATTATTGATGTTTTAATGCAGATGCTAAATGCTTTGGATCCCCACAGTAAGGAGGGAATAAAGCAGGAAGTGATAATAGATCTTGTAGAACAATGTCGTTCTTACAAGCAGCGGGTGATGCATCTTGTGAATACAACTTTGGATGAGGGGCTTCTTTGTCAGGGTCTTACATTGAATGATGACCTGCAGCGTGTACTTGGAAAGCATGATGCAATTGTTGCAGGAGCTCCTGTTACATGGGAAAAGACATTAGCTCCTTCACCTTCTCTTGTTAATGTTAACAATGAGGAAGATGAGACAGAGGATGATTTGGTTCAACTGTCTCGGAGGTCTTCAAGAGTGAATACACAATCACAAGATAAAGCTAGTAGCAATGTGAGGAATCAGCCTGCTGCTCCTCTCCCATTGTTACCTCCACCACCAGGACTGAAAAAGGTCAATACTCCATCTAACAAGCTTGAGCAAACAGTGGATTTTCTCAGTGGTGATGCTTATGAGTCACCAACTACTGCAACTCCACCAGCAGCTAGCCCACCCAGTGGGCAATACATGCAGACCTCACCAGGTTCCATTTCCCAACAGGCTCCATATCCATTTAATTCACAACCAAGTGCTCAAGATGTCTTGACAACACAGCCAACATATTCTTCATCCCAAGTGCTACAACAACCATATCATCCAAATGGAAGTAACTCTTTGGCGATTTCTTCAACACAGCAGCATGAATATCAAAAGTTTCAATCCGAAGGCCAGGAATCACGTCTGGACAATGCTGGCCATGCTTTACAATGGTCAAATCCAGCAGGGCAGTCCCATAAGCCACAGCAGTCAATTCTTGTACATGATGCACAGTCAGTCAATTTGAATGTGCCTGCACAGAAAAGTCCTGGAAGTCTTCCCCCTGCTCCTTGGGATGTTCAATCTCCACAGAATGTATCACAAGTAGCAGACAGTCAACAAGGGCCTCTTGTATATGGCAGCAATCTCAAACCAGGGATTCCACCCCCTCCAGCATTTTACAACCAGAGACAACAATTTTTCCAGCAGCATCACTCTTCAGGTCCTGGCCAGTTTATGCATGGTTATTCTGAAACTGCACATGATGATCTGATAGGAAGGGCTCAAAACCTGTCACTCCATGATGGCACATACAACACATCATATGGAACTCCCTCATATTCACAGCATTCTTCAACTTCCACTAGACAAGTTAAGCCTGAAGATAAGCTGTTTGAAGACTTGGTAAACTTGGCCAAGGCAAAAGATAAGATTTCATCTGGTAAAAGTGGAAGTTTGTAAAATATAGAGTTTGTTGCATGGGATGGTCGGTATTGATGTTGTTGTGTAGCTTGTTACACGAGATGATTTAGGCATAGGCATTGTTTTAGAGAATCTACTGTATAGGCTTTTGTTCCATCGAGGTTAATTGCTCGCCATGTGCTCATATTTATCTTAGCACTACTGTTTGATTTATTTTGTGATTTATGTTTCATGAATTTACATGCCCAAATCTTTGTAGATTTGTATATTGTTAAGTAGGATGGCCTTTACCTTCCAGGGAAAACAGTGCAAATTCCAAAATTCTGTTAAATATATTGTAGCTATTGGATAAAGCTAGTGGTGCTAGAGTACCTATGAAAGAGGAATAAACTATTTTAGAGAAGCTTTTCTGAATATACAAGTATTA

Ace file of the UniGene sp_v2.0_unigene6904 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein transporter, putative n=1 Tax=Ricinus communis RepID=B9S2Q1_RICCO	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular protein transport	GO:0006886	Biological Process	0.0	60%
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	VHS	IPR002014	-	-
Sma3	GAT	IPR004152	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Target of Myb protein 1	IPR014645	-	-
Sma3	VHS subgroup	IPR018205	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACU8

Fln msg: your sequence is longer than subject: 627 - 394

Fln protein: MAAALVERATSDMLVSPDWAMNIEICDVLNNDPGQAKDVIKSIKKRIGNKNPKIQILALTLLETLIKNCGDNVHQQVAERDVLHEMVKIVKKRPDLNVREKILVLLDTWQEAFGGPRGKYPQYYSAYNDLLRAGVEFPPRPESSAPIFTPPQTQPITYPSQTYGSPDYENEAVEASLASDLPGLSLTEIQNARDIIDVLMQMLNALDPHSKEGIKQEVIIDLVEQCRSYKQRVMHLVNTTLDEGLLCQGLTLNDDLQRVLGKHDAIVAGAPVTWEKTLAPSPSLVNVNNEEDETEDDLVQLSRRSSRVNTQSQDKASSNVRNQPAAPLPLLPPPPGLKKVNTPSNKLEQTVDFLSGDAYESPTTATPPAASPPSGQYMQTSPGSISQQAPYPFNSQPSAQDVLTTQPTYSSSQVLQQPYHPNGSNSLAISSTQQHEYQKFQSEGQESRLDNAGHALQWSNPAGQSHKPQQSILVHDAQSVNLNVPAQKSPGSLPPAPWDVQSPQNVSQVADSQQGPLVYGSNLKPGIPPPPAFYNQRQQFFQQHHSSGPGQFMHGYSETAHDDLIGRAQNLSLHDGTYNTSYGTPSYSQHSSTSTRQVKPEDKLFEDLVNLAKAKDKISSGKSGSL*

Protein Length: 628

Fln nts: TCAGGGGAGTACAGAGATGGTTGATAGAGAGGGTTCTTCAGAGCACCAGAACATACGTAAACACTAGGGGGTCTGGTCACCGTTGCAGTGCCCAAGCGCTTTCTGTTCCTCCATTCTCTGCTCCGGAGGCTCAAAATGATGGCTTCCTGACCAAATCGCGACCACTGGGACTCCAACATCAGATTGGCCACAATTGAGCAAACTTTTTGGTTTTAATGTCCCTGATTGAAGCCAGGGCCTAAAGTGATTAAAACTAAGGAATTGTCAATCTCGTTCCAGCTTGGGTAGTCTTAATGTGCTGAAGGCAGAGCTGTTCTTACTGAATATTATTGCAAGTGGAATATACCAGGAATAAAGACAAGGGTTAAGA_-_ATGGCTGCCGCTCTTGTTGAGAGGGCTACCAGTGACATGTTGGTTAGCCCTGATTGGGCAATGAACATTGAGATTTGTGATGTTCTTAATAATGATCCAGGACAAGCAAAGGATGTCATTAAATCAATCAAGAAGCGCATCGGAAATAAGAACCCCAAGATCCAGATTCTTGCACTGACTCTGTTAGAGACTCTTATAAAAAATTGTGGCGATAATGTTCATCAACAAGTAGCTGAACGAGATGTACTGCATGAAATGGTCAAGATCGTAAAGAAAAGGCCAGATTTAAATGTAAGAGAAAAAATATTGGTCCTGTTAGATACGTGGCAGGAAGCCTTTGGGGGTCCAAGGGGAAAATATCCACAATATTACTCTGCATACAATGATTTACTGCGTGCAGGAGTAGAATTTCCACCACGTCCAGAGAGTTCTGCTCCAATATTCACACCTCCGCAGACACAACCGATAACTTATCCGTCTCAGACCTATGGATCTCCAGACTATGAAAATGAAGCAGTTGAGGCATCCCTGGCATCTGATCTTCCTGGTCTTAGCCTGACAGAAATTCAGAATGCTCGTGATATTATTGATGTTTTAATGCAGATGCTAAATGCTTTGGATCCCCACAGTAAGGAGGGAATAAAGCAGGAAGTGATAATAGATCTTGTAGAACAATGTCGTTCTTACAAGCAGCGGGTGATGCATCTTGTGAATACAACTTTGGATGAGGGGCTTCTTTGTCAGGGTCTTACATTGAATGATGACCTGCAGCGTGTACTTGGAAAGCATGATGCAATTGTTGCAGGAGCTCCTGTTACATGGGAAAAGACATTAGCTCCTTCACCTTCTCTTGTTAATGTTAACAATGAGGAAGATGAGACAGAGGATGATTTGGTTCAACTGTCTCGGAGGTCTTCAAGAGTGAATACACAATCACAAGATAAAGCTAGTAGCAATGTGAGGAATCAGCCTGCTGCTCCTCTCCCATTGTTACCTCCACCACCAGGACTGAAAAAGGTCAATACTCCATCTAACAAGCTTGAGCAAACAGTGGATTTTCTCAGTGGTGATGCTTATGAGTCACCAACTACTGCAACTCCACCAGCAGCTAGCCCACCCAGTGGGCAATACATGCAGACCTCACCAGGTTCCATTTCCCAACAGGCTCCATATCCATTTAATTCACAACCAAGTGCTCAAGATGTCTTGACAACACAGCCAACATATTCTTCATCCCAAGTGCTACAACAACCATATCATCCAAATGGAAGTAACTCTTTGGCGATTTCTTCAACACAGCAGCATGAATATCAAAAGTTTCAATCCGAAGGCCAGGAATCACGTCTGGACAATGCTGGCCATGCTTTACAATGGTCAAATCCAGCAGGGCAGTCCCATAAGCCACAGCAGTCAATTCTTGTACATGATGCACAGTCAGTCAATTTGAATGTGCCTGCACAGAAAAGTCCTGGAAGTCTTCCCCCTGCTCCTTGGGATGTTCAATCTCCACAGAATGTATCACAAGTAGCAGACAGTCAACAAGGGCCTCTTGTATATGGCAGCAATCTCAAACCAGGGATTCCACCCCCTCCAGCATTTTACAACCAGAGACAACAATTTTTCCAGCAGCATCACTCTTCAGGTCCTGGCCAGTTTATGCATGGTTATTCTGAAACTGCACATGATGATCTGATAGGAAGGGCTCAAAACCTGTCACTCCATGATGGCACATACAACACATCATATGGAACTCCCTCATATTCACAGCATTCTTCAACTTCCACTAGACAAGTTAAGCCTGAAGATAAGCTGTTTGAAGACTTGGTAAACTTGGCCAAGGCAAAAGATAAGATTTCATCTGGTAAAAGTGGAAGTTTGTAA___AATATAGAGTTTGTTGCATGGGATGGTCGGTATTGATGTTGTTGTGTAGCTTGTTACACGAGATGATTTAGGCATAGGCATTGTTTTAGAGAATCTACTGTATAGGCTTTTGTTCCATCGAGGTTAATTGCTCGCCATGTGCTCATATTTATCTTAGCACTACTGTTTGATTTATTTTGTGATTTATGTTTCATGAATTTACATGCCCAAATCTTTGTAGATTTGTATATTGTTAAGTAGGATGGCCTTTACCTTCCAGGGAAAACAGTGCAAATTCCAAAATTCTGTTAAATATATTGTAGCTATTGGATAAAGCTAGTGGTGCTAGAGTACCTATGAAAGAGGAATAAACTATTTTAGAGAAGCTTTTCTGAATATACAAGTATTA

Fln Alignment:

Contig6904___MHLVNTTLDEGLLCQGLTLNDDLQRVLGKHDAIVAGAPVTWEKTLAPSPSXXXXXXXXXXXXXXXVQLSRRSSRVNTQSQDKASSNVRNQXXXXXXXXXXXPGLKKVNTPSNKLEQTVDFLSGDAYEXXXXXXXXXXXXXSGQYMQTSPGSISQQA-PYPFNSQPSAQDVLTTQPTYSSSQVLQQPYHPNGSNSLAISSTQQHEYQKFQSEGQESRLDNAGHALQWSNPAGQSHKPQQSILVHDAQSVNLNVPAQKSPGSLPPAPWDVQSPQNVSQVADSQQGPLVYGSNLKPGIPPPPAFYNQRXXXXXXXXXSGPGQFMHGYSETAHDDLIGRAQNLSLHDGTYNTSYGTPSYSQHSSTSTRQVKPEDKLFEDLVNLAKAKDKISSGKSGSL
D5ACU8______________MHLVNTTLDEELLCQGLTLNDDLQRVLGKHDAIVAGAPVTWEKTLAPPPSLVNVNNEEDETEDDLVQLSRRSSRVITQSQDKASGNVRNQPAAPLPLLPPPPGLKKVNTPSDKLEQTVDFLSGDAYESPTTATPPAASPPSGQYMQTSPGSISQQATPYPFNSQSSAQDVLITQPTYSSSQVLQQPYHPNGSNSLAISSTQQHEYQKFQPEGQELRVDNAGHALQWSNPAGQSHNPQQSILAHDAQSLNLNVPAQKSPGGLPPAPWDVQSPQNVPQVADSQQGPLLYGSNLKQVIPPPPALYNQRQQFFQQQHSSGPGQFMHGYSETAHDDLIGRAQNLSLHDGTYNTTYGTSSYSQHSSAPTRQVKPEDKLFEDLVNLAKAKDKIASGKSGSL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
2596		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain