SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6902

Length: 681 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6902

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Indole-3-acetate O-methyltransferase 1 n=3 Tax=Oryza sativa RepID=IAMT1_ORYSJ	-	-	4.0e-19	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	s-adenosyl-l-methionine salicylic acid carboxyl methyltransferase-like protein	-	-	0.0	58%

Source	GOs	Term	Type	Identity
Blast2go	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	58%
Blast2go	methylation	GO:0032259	Biological Process	58%
Blast2go	auxin homeostasis	GO:0010252	Biological Process	58%
Blast2go	identical protein binding	GO:0042802	Molecular Function	58%
Blast2go	indole acetic acid carboxyl methyltransferase activity	GO:0051749	Molecular Function	58%
Blast2go	S-adenosylmethionine-dependent methyltransferase activity	GO:0008757	Molecular Function	58%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
281		20		80	0.995493
282			20	80	0.995493
285		80	20		0.995493
288	20	80			0.995493
289		20	80		0.995493
293		80	20		0.995493
294		80	20		0.995493
296		25		75	0.996473
300		25		75	0.996473
301	25		75		0.996473
302		25	75		0.996473
303	75			25	0.996473
337	71	28			1.0
338	71		28		1.0
340	71	28			1.0
342		10		90	0.90298
343	30		30		1.0
344	60			10	1.0
346	70	20			0.999998
347			80	20	0.999996
349	70		30		1.0
350	80		20		0.999996
352		10		90	0.90298
353			20	80	0.999996
355		20	10	70	0.999998
356	90		10		0.90298
359	70	20		10	0.999998
360	90	10			0.90298
365	10	90			0.90298
673		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain