SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6900

Length: 937 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6900 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sex determining protein n=3 Tax=Mus musculus musculus RepID=O35861_MOUSE	-	-	5.0e-20	28%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	23%
Blast2go	sex determining protein	-	-	1.52923e-22	40%

Source	GOs	Term	Type	e value	Identity
Blast2go	developmental process	GO:0032502	Biological Process	1.52923e-22	40%
Blast2go	binding	GO:0005488	Molecular Function	1.52923e-22	40%

Source	InterPros	Term	Type	Identity
Sma3	High mobility group, HMG-I/HMG-Y	IPR000116	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	ROK	IPR000600	-	-
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Rhodopsin, archaeal/bacterial/fungal	IPR001425	-	-
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	HMW kininogen	IPR002395	-	-
Sma3	Cell surface receptor IPT/TIG	IPR002909	-	-
Sma3	SRA-YDG	IPR003105	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Repetitive proline-rich cell wall protein repeat	IPR003883	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pre-SET domain	IPR007728	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	Peptidase M11, gametolysin	IPR008752	-	-
Sma3	Procyclic acidic repetitive	IPR008882	-	-
Sma3		IPR010616	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Peptidase M10B, serralysin, C-terminal	IPR013858	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A9SWJ2

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 312 - 407

Fln protein: KFVIIIFYTYLIQYMEPILFISPTDIYAKIA*RSNLTTRFIAMQITS*RKPCKLLSKLRQPSQFSSSLPFSIPHHHQLLHRFHSQNHHLSRFHSHCRNRNQNQTRSLNQRQSRFHSRHHLQSQNHFRSHSHFLNRFHNHRQNQNQNHSQSQNRFRSHYLNQNQTHILNQSQNRFRSHYLNQNQTHILNQSQNRFHSHCHFPNQTRSLIQSQNRFHNHYQSQSHFHNHCQIRSRNHSLNQTQSHFHSHCHRQNHFHNHYQNRSHSQNHFHNHYQSRSHRHNRTPPRRRCRYRYRNLVHNYPPSHPCDRFLMHD

Protein Length: 313

Fln nts: AAATTTGTAATAATAATATTTTATACTTACCTAATACAGTACATGGAGCCAATACTGTTTATATCACCCACTGATATATATGCAAAGATTGCATAGCGTTCTAATTTAACTACACGCTTTATTGCGATGCAAATTACATCGTAAAGAAAACCATGCAAGTTATTGAGCAAACTTAGACAGCCTTCTCAGTTTTCGTCTTCACTTCCATTTAGTATCCCCCACCACCACCAGCTCCTCCACCGTTTCCATAGCCAGAACCACCATCTGAGCCGCTTCCATAGCCATTGCCGGAACCGGAACCAGAACCAGACCCGTAGCCTGAACCAGCGCCAGAGCCGCTTCCATAGCCGCCACCACCTCCAGAGCCAGAACCACTTCCGTAGCCACTCCCACTTCCTGAACCGTTTCCATAACCACCGCCAGAACCAGAACCAGAACCATAGCCAGAGCCAGAACCGCTTCCGTAGCCACTACCTGAACCAGAACCAGACCCATATCCTGAACCAGAGCCAGAACCGCTTCCGTAGCCACTACCTGAACCAGAACCAGACCCATATCCTGAACCAGAGCCAGAACCGCTTCCATAGCCACTGCCACTTCCCGAACCAGACCCGTAGCCTGATCCAGAGCCAGAACCGCTTCCATAACCACTACCAGAGCCAGAGCCACTTCCATAACCACTGCCAGATCCGGAGCCGGAACCATAGCCTGAACCAGACCCAGAGCCACTTCCATAGCCACTGCCACCGCCAGAACCACTTCCATAACCACTACCAGAACCGGAGCCACTCCCAGAACCACTTCCATAACCACTACCAGAGCCGGAGCCACCGCCATAACCGGACCCCGCCCCGTCGCCGTTGCCGTTACCGTTACCGTAACCTGGTCCATAACTACCCCCCGAGCCACCCTTGCGACCGCTTCCTAATGCACGACC

Fln Alignment:

Contig6900___HHHQLLHRFHSQNHHLSRFHSHCRNRNQNQTRSLNQRQSRFHSRHHLQSQNHFRS---HSHFLXXXXXXXXXXXXXXXXXXXXXXSHYLNQNQTHILNQSQNRFRSHYLNQNQTHILNQSQNRFHSHCHFPNQTRSLIQSQNRFHNHYQSQSHFHNHCQIRSRNHSL-NQTQSHFHSHCHRQNHFHN-HYQNRSHSQNHFHNH
A9SWJ2______________HHKE--HGSHSHHHSSHKDHHHSRDRYHHRSYHSPDRHSQHSQERSSGHKHHARSPERHGH------------------------SSHSHHSQGHRHRSSSHK--SHHSRSPDRHHSHGHRHHHHKECSDGHHSSHHSKESRGHHHHYESSEHRGHH---RSRDHSEGSEHRGHHRSPDHKESSEHRGHHRNRDHKEGSEHSH

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
608		80	20		0.995493
610		20	80		0.995493
611	20		80		0.995493
613			80	20	0.995493
615	20			80	0.995493
628			83	16	0.994512
634	16		83		0.994512
635			83	16	0.994512
636			16	83	0.994512
675	83		16		0.994512
749	83	16			0.994512
819	87		12		0.992554
906		50		50	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
498	518	TGGTTC TGGTTC TGGTTC TGG	21
708	719	TGG TGG TGG TGG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain