SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6884

Length: 766 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6884

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Exosome complex exonuclease RRP6 n=3 Tax=Arabidopsis RepID=A9LLI7_ARATH	-	-	3.0e-26	42%
FL-Next	tr=Putative nucleolar protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	42%
Blast2go	exosome component 10-like	-	-	4.42875e-29	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	4.42875e-29	61%
Blast2go	binding	GO:0005488	Molecular Function	4.42875e-29	61%
Blast2go	catalytic activity	GO:0003824	Molecular Function	4.42875e-29	61%
Blast2go	intracellular	GO:0005622	Cellular Component	4.42875e-29	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Helicase/RNase D C-terminal, HRDC domain	IPR002121	-	0.0	-
Sma3	3'-5' exonuclease domain	IPR002562	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
90	80		20		0.995493
91	60		20	20	0.99255
92		60	40		1.0
93	80		20		0.995493
95		80	20		0.995493
131	12		87		0.992554
133			12	87	0.992554
134			12	87	0.992554
135			12	87	0.992554
548		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain