SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6877

Length: 1260 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6877

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	contains similarity to nodulin MtN3 protein [Arabidopsis thaliana]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	58%
Blast2go	seven-transmembrane-domain protein 1	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	0.0	72%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	RAG1-activating protein-1-related	IPR004316	-	-
Sma3		IPR018169	-	-
Sma3		IPR018179	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B6T9M1

Fln msg:

Fln protein: MATGDMIRTVLGIIGNIISLCLFLSPAATFYNIWKWKSTRKYSGIPYVATLLNCMLWVFYGIPIVHPNSILVVTINGTGVFLEVIYVTMFVIYCSKDSRPRVLKMLAVAAVFFAAVVVLTLTLAHTHEKRSLIVGLLCVVFGTCMYAAPLAAIRNVVRTKSVKYMPFSLSLASFANGAIWMAYACIHFDIFITIPNGLGAFLGALQLILYGIYYKTTVWGDDEEVDKVEGPA*

Protein Length: 234

Fln nts: ATGGGGACAGCGGCAGGCGATTCAATTGGGTTGAGAAAGTCGAGGCGGTGGATGAGAAAAATGGATGGACTGGCACCGTGACAAAATTAACCTCGCGCTTTAGTCATAACTAAAGCAGTAACCAGAACCGATGGGACTATAAAGCTCCAAACGCCCAAGCTTTTGCTCTCAGTGGCCTCTGTGAAGATACTGTATTTTCTGTCTGTTCACGTTCCAAATTTGTGCTTTTCAGTCTGTTATTTTCCACGGTTCTTGCTTGTTTTTGTTCGTTTGTGCTTCCGTAGCA_-_ATGGCGACGGGAGATATGATTCGTACCGTGCTCGGCATTATCGGTAACATTATTTCGCTGTGCCTCTTCTTGTCCCCGGCGGCGACCTTTTACAATATTTGGAAATGGAAATCCACACGCAAGTACTCAGGCATCCCGTACGTCGCAACGCTGCTCAATTGCATGCTCTGGGTGTTCTACGGCATTCCCATCGTGCATCCGAACAGTATTCTGGTGGTGACAATCAACGGAACCGGAGTCTTTCTGGAGGTCATTTATGTCACGATGTTCGTCATTTACTGCAGTAAAGACAGCAGGCCCAGGGTGTTGAAAATGCTGGCTGTAGCGGCGGTGTTCTTCGCCGCGGTAGTGGTGCTGACGCTGACGTTGGCGCACACGCACGAGAAGCGGTCATTAATTGTTGGACTTCTTTGCGTGGTGTTCGGCACCTGTATGTATGCGGCCCCGTTGGCTGCGATTAGGAACGTCGTGAGGACCAAAAGCGTAAAGTACATGCCATTTTCCCTCTCTCTTGCTTCCTTCGCTAACGGAGCTATCTGGATGGCCTACGCATGCATACATTTTGACATCTTTATCACTATTCCTAATGGGCTCGGAGCCTTTCTGGGCGCCCTGCAGTTGATACTATACGGAATATATTACAAAACAACAGTATGGGGAGACGACGAGGAAGTGGACAAGGTCGAAGGTCCTGCATGA___ACTCAACTCAGGGGGGCAATACGAGCTAGCAACAGCAGAAGGTTTATTAGGTTGCTGACTTGAAGGATTTTCCCTGTGTAAAATTGCTCGCTTCCAACTCTTTGGTAGGTAGATATTGCGGCAACGGAGTGCCTGAAAAATTCGGCGTCTCTCTTGTTATCGTTCATCGTTCATTTTGAATTGGCAAAGGTATTACATTAATGGATATCTAAGATTTCAAAATATTAATTTCCTAGTTTAAAATTCTACACCCTTCCTGCTCCTAAACACCCTCC

Fln Alignment:

Contig6877___MATGDMIRTVLGIIGNIISLCLFLSPAATFYNIWKWKSTRKYSGIPYVATLLNCMLWVFYGIPIVHPNSILVVTINGTGVFLEVIYVTMFVIYCSKDSRPRVLKMXXXXXXXXXXXXXXXXXXXHTHEKRSLIVGLLCVVFGTCMYAAPLAAIRNVVRTKSVKYMPFSLSLASFANGAIWMAYACIHFDIFITIPNGLGAFLGALQLILYGIYYKTT
B6T9M1______________MISPDAARNVVGIIGNVISFGLFLSPVLTFWRIYKAKDVEEFKPDPYLATLLNCMLWVFYGIPVVHPNSILVVTINGIGLVIEAVYLTIFFLYSDSQKRKKAFAILAVEILFMVAVVLGVILGAHTHEKRSMIVGILCVIFGSMMYASPLTIMSRVIKTKSVEYMPFLLSLVSFLNGCCWTAYALIRFDLYVTIPNALGAFFGLVQLILYFCYYKST

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
68	33		66		0.997452
211	33		66		0.997452
799		12		87	0.992554
801		87		12	0.992554
802			12	87	0.992554
803	12			87	0.992554
808		85	14		0.993533
812	85		14		0.993533
813	85			14	0.993533
815	14		85		0.993533
816		14	85		0.993533
817	85			14	0.993533
818		14	85		0.993533
819	14	85			0.993533
824	14			85	0.993533
835		14		85	0.993533
866	80	20			0.999996
867			20	80	0.999996
870		80	20		0.999996
873	80	20			0.999996
875			80	20	0.999996
880		80	20		0.999996
881			80	20	0.999996
882		20	80		0.999996
884			80	20	0.999996
886	22	77			0.999999
944			90	10	0.90298
945			90	10	0.90298
946	90	10			0.90298
1060		16		83	0.994512
1065	83		16		0.994512
1067	83	16			0.994512
1068	83	16			0.994512
1074		83	16		0.994512
1075			83	16	0.994512
1077		16		83	0.994512
1080	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain