SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6872

Length: 1751 nt

Origin of reads: Inia v1 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6872 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Cytochrome P450 750A1; AltName: Full=Cytochrome P450 CYPC gb\|AAX07433.1\| cytochrome P450 CYPC [Pinus taeda]	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	cytochrome p450 monooxygenase cyp736b	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	75%
Blast2go	heme binding	GO:0020037	Molecular Function	75%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	75%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Hemocyanin, copper-type	IPR000896	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQV6

Fln msg:

Fln protein: MVIELVSASPGHECPYFYFNLATVILLAVVTAWSFLLRGRKQKLPPGPFQWPIVGNLHMMGELPHQAITALSMKYGPLMSLRLGSYLTLVVSSPDVAEEFLKTHDLAFSSRPPTIGTKYLWYNSSDITFSPYGPYWRQMRKICVLQLLSSRRINSFRHIREEEVSAMIRSIANSDLHPVNISRAVSALVLDIICRMAFGKKYCDQDLIGGIGINSMIKETFVLAGSLNMGDFIPYLAWMDLQGLNRRLKNIHKIQDDLLEKILEEHASPPQNNPNYMPDLVDVLLAASADEDLEFQITRDNIKSVIYDILSAGSDTSSGNIEWAMSELLRNPPVLKKLQDELERVVGLDRMVHESDLPCLVYLQAVVKETLRLHPPGPLSLPHVSVKDCTVLGYEIPRGTRLLVNLWAIGRSPKSWGEDAECFQPERFMELGFLDAKVQNFEWIPFGAGRRGCPGQQLGTLVVEFAVAQLTHCFNWRLPDEQKMDMSEKNNGLTISRAHELLAFPTPRFPIL*

Protein Length: 514

Fln nts: GCGTCTGTCTAGGGAGCTCGGAGTCACGATA_-_ATGGTGATTGAATTGGTTTCTGCGaGTCCAGgtCATGAATGCCCATACTTCTATTTTAATCTCGCTACTGTTATTCTTCTGGCCGTGGTGACGGCATGGAGTTTCTTATTGCGGGGAAGAAAACAGAAGCTTCCTCCGGGGCCTTTTCAGTGGCCGATTGTTGGAAACCTTCACATGATGGGAGAGCTTCCACACCAAGCAATTACAGCTCTCTCTATGAAATATGGGCCTCTCATGTCTCTCCGCCTCGGCTCCTATCTCACTTTGGTCGTCTCTTCTCCAGATGTGGCCGAGGAGTTCCTGAAGACTCATGATCTGGCTTTCTCCAGCAGACCTCCAACCATCGGTACGAAGTACTTGTGGTATAATTCCTCCGACATCACATTTTCTCCTTATGGTCCTTACTGGAGGCAGATGCGTAAAATCTGTGTGTTACAGTTGCTGAGCTCAAGACGCATAAATTCCTTCCGCCACATAAGAGAAGAGGAAGTCTCTGCTATGATTCGCTCTATTGCAAATTCGGATCTGCATCCTGTGAACATTAGCAGGGCCGTGTCAGCCCTTGTGCTTGATATAATCTGCAGGATGGCCTTCGGTAAAAAGTACTGTGACCAAGACCTAATTGGTGGCATTGGGATCAACTCAATGATAAAGGAAACGTTTGTATTAGCAGGGTCTTTGAACATGGGAGATTTCATACCATACTTGGCATGGATGGATCTTCAAGGTCTCAACCGTCGATTGAAGAACATACACAAGATCCAAGACGACTTGTTAGAGAAGATACTAGAGGAACACGCTTCGCCACCGCAGAATAACCCCAACTACATGCCTGATCTCGTGGATGTTTTGCTCGCGGCCTCTGCGGATGAAGATCTGGAGTTCCAAATTACTCGAGACAATATAAAATCTGTCATCTATGATATCTTGTCCGCTGGTTCGGACACGTCGTCTGGAAACATAGAGTGGGCAATGTCCGAATTGCTGAGAAACCCTCCAGTTCTGAAGAAGCTTCAGGATGAGCTGGAACGCGTAGTTGGACTTGACCGTATGGTACATGAATCCGATCTGCCTTGTCTGGTTTATTTACAAGCTGTGGTGAAAGAAACGTTGCGACTCCACCCACCTGGACCGCTTTCCCTTCCCCACGTATCTGTGAAGGATTGCACTGTGTTGGGCTATGAAATTCCTCGGGGGACTCGCCTTTTAGTGAATTTATGGGCAATTGGAAGGAGCCCGAAGTCATGGGGGGAGGATGCTGAATGTTTCCAGCCAGAGAGATTCATGGAGTTAGGGTTCCTGGATGCAAAAGTGCAAAACTTTGAGTGGATTCCATTCGGAGCCGGAAGGAGAGGATGCCCCGGACAGCAATTGGGAACGCTTGTTGTAGAGTTCGCCGTGGCGCAGCTCACTCACTGTTTCAACTGGAGGCTCCCCGATGAGCAAAAAATGGATATGTCTGAAAAGAATAATGGACTTACCATTTCAAGGGCGCATGAACTCTTGGCCTTTCCAACTCCTCGATTTCCGATACTGTAG___TTCGTAAGATGTATGTGTATCGACTTGTTTATTGTGATCTGGATTGTATTCAACTTAGGCAGAGAGCCTGTGGAAATACAAACCTGTGGTCCTCTTCCTTGCGTTTGTCGACAACCGTTATCCCCATTGCAGACTCTCTTTACGAGTAAGCGGCTTTGCGGACCCACTTCTCTCAATATTG

Fln Alignment:

Contig6872___MVIELVSASPGHECPYFYFNLA-TVILLAVVTAWSFLLRGRKQKLPPGPFQWPIVGNLHMMGELPHQAITALSMKYGPLMSLRLGSYLTLVVSSPDVAEEFLKTHDLAFSSRPPTIGTKYLWYNSSDITFSPYGPYWRQMRKICVLQLLSSRRINSFRHIREEEVSAMIRSIANSDLH---PVNISRAVSALVLDIICRMAFGKKYCDQDLIGGIGINSMIKETFVLAGSLNMGDFIPYLAWMDLQGLNRRLKNIHKIQDDLLEKILEEHASPPQNNPNYMPDLVDVLLAASADEDLEFQITRDNIKSVIYDILSAGSDTSSGNIEWAMSELLRNPPVLKKLQDELERVVGLDRMVHESDLPCLVYLQAVVKETLRLHPPGPLSLPHVSVKDCTVLGYEIPRGTRLLVNLWAIGRSPKSWGEDAECFQPERFMELGFLDAKVQNFEWIPFGAGRRGCPGQQLGTLVVEFAVAQLTHCFNWRLP---DEQKMDMSEKNNGLTISRAHELLAFPTPRFPIL
C0PQV6______________MANELGSDRAVQRCLEFYLQLASTAILLFLMAAWAFFFRGRKLKLPPGPFRFPIIGNLHLMGRLQHKALAALSVKYGPLFSLRLGSALTLVVSSPDMAKEFLKTHDLVFASRPPSTATKYLWYNSSDVTFSPYGRYWRQMRRLFVSQLLSSRRVDSFRFIREEEVSAMIRSIIISYHEGSLPVNIGKIVSVLGIDIICRIAFGRKYTDQQLMDGRGIHSMIQETFLLAGSFNIGDYIPYLAWMDLQGLNRRLKNIHKTQDALLEKIVEEHFS--QNKPNAMPDLLDVLLAASADENLGLQITRDNIKSAVYDILSAGSDTSSTSIEWAMSEVLRNPPVLKKIQEELERVVGMGRMVHESDLPRLVYLQAVVKETLRLHPPGPLLLPHISIETCNVLGYKIPSGTRLLVNVWAIGRNPKSWGEDAESFKPERFMEAGFLDAKVENFEWIPFGAGRRGCPGQQMAMIVVEFAVAQLLHCFNWRLPDDMDEQKLDMSEKNHGITVSRAHELFAVPTPRLPVL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1162		66		33	0.997452
1168		66		33	0.997452
1193		75		25	0.996473
1205	25			75	0.996473
1227			50	50	1.0
1231		75		25	0.996473
1241		33		66	0.997452
1261		33		66	0.997452
1322	83		16		0.994512
1328	83		16		0.994512
1342		11		88	0.923564
1413	14		85		0.993533
1430	14		85		0.993533
1460	14		85		0.993533
1496	85		14		0.993533
1499	14			85	0.993533
1503	66		33		1.0
1553	14		85		0.993533
1685			33	66	0.997452
1686		33		66	0.997452
1689	33			66	0.997452
1691	66		33		0.997452
1692	66			33	0.997452
1694	33			66	0.997452
1695		33	66		0.997452
1699	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain