SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6794

Length: 1953 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene6794
CGGGAATCAAAAGCGTCTCTGAATCCCTTTTATGGGGGGAACAATTCGTTCAAGCGGAGGTCTGAACAAACTCCGAACCCTCCACAACGCTTCGACTCCGCATAGGGGTAGATGTTCAGAAAAAACGGTTGATAACGTACCCTTTTCTTAGTTTTCAGTTTTCCTTTGCCACCAGTGCTGTGAAAGAAGGGAAGTTCAAATGGCTGGCTCATCCGCCCCACTCTCATCATCCGCAGGCAACTATGATTTGCCGTGGGTTGAAAAATACAGGCCCACTAAGGTATCTGATATTGTTGGCAACCAGGACGCCATTTCAAGGCTTCAAGTCATTGCCAGGGATGGCAACATGCCCAACCTTATCTTAGCTGGTCCTCCTGGAACAGGGAAGACCACCAGTATACTGGCACTTGCTCATGAACTTCTGGGAAGCAATTATAGAGAAGGTGTTATAGAACTCAATGCCTCTGATGACAGGGGTATCGATGTTGTGAGAAACAAGATCAAAATGTTTGCACAGAAAAAGGTAACACTCCCTCCAGGGCGGCACAAGATAATAATTTTGGATGAGGCTGATAGCATGACAGGTGGAGCGCAACAAGCTCTTAGGCGCACCATGGAAATCTTCTCCAATTCAACAAGATTTGCACTTGCATGTAACACTTCAGCGAAAATCATCGAGCCCATACAGAGCAGATGTGCTATTGTGCGTTTCACAAAGTTATCAGACCAGGAGATCCTTGGGCGCCTTATGCGAGTAGTTGAAGCTGAAAAGGTAGCTTATATACCTGAAGGACTGGAAGCAATTATATTCACAGCTGATGGAGACATGAGGCAAGCTTTGAATAACTTGCAAGCCACATACAGTGGTTTTCAGTTTGTCAACCAAGAGAATGTGTTTAAGGTTTGTGATCAACCTCATCCTTTACATGTGAAAAGCATGGTCCAGAATGTGCTGGAAGGGAACTTTGATGAGGCCTGTAGTCGTCTAAAGAGCCTGTATGATCTTGGTTATTCTGCAACTGACATCATTACAACACTTTTCCGTGTGATAAAAAATTATGATATGCCTGAGTATCTGAAGCTGGAATTTATAAGGGAAACTGGTTTTGCACATATGAGGATATCAGATGGAGTCGGTTCACTTCTCCAATTATCTGGTCTTCTTGCCAAGTTATCCATTGTCCGGGATACATCCAAAGCTGCATAGTTATGTTTGGATTTGGTAATGTGTGTTTGTTTAGGAAATGCAAAGCTAGTCGTGAAAGGTTAGATTGTGTGAGAAACAGATTGTCTAAGAGCATGGGTACGATGAAATCGATGAGAAGCATGCCCTGCATATGCTATAATCCAAATTGTTTTCCAGCCTTAAAAAACCTTTCATTATTTTTGTGTTTAACAATGAGTTTGAGTTGTCTAATTTAGCTCAGCTAATCCTATTCTGGGGATAAAGATTTCTATGAAAGTTATTCTGTCAATTTTGAAGTGGGTTGAATTTATTGCTAAATTTTGCTGATTAGCATTGATTCTCTATATGAAGCAGGTGCAATCAGTGCTGCCAAAAGCCTATTTTGATAAAAGAAAGCTATTTCTATCACTGGAAGTAGCATAAGAATCGAAGTTTGGCTCCTTGAACATAATTATTCTACTCAGGTTGCACAGTTCATAAAGACAATAACATAGTTAGTTAGCATGTGTGTGCATATGTGACTTTCATAACTCATACATGCAGACATAGAAGTGCCAGGAAACATACTCAATACAATGTTCATTTGTATTATGTGTTGATAGTGATGCTACAATTCAATTTTTAGGGGGTCTTTATATCCATGAGGCAGCACACTCTAAGACTACGTTGGGAATGCATTGGTTTGGCGATGTACACGTTACAGTGCTCAGAATGCACATATGTTATACTAATAAACTTAAAAGTACATGTGTGCATAATTACCTTAT

Ace file of the UniGene sp_v2.0_unigene6794 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	replication factor C 40kDa subunit [Oryza sativa Japonica Group] emb\|CAH67033.1\| OSIGBa0139P06.6 [Oryza sativa Indica Group] gb\|EEC77820.1\| hypothetical protein OsI_17026 [Oryza sativa Indica Group]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	replication factor c subunit 2-like	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	92%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	92%
Blast2go	Pyrimidine metabolism	00240	92%
Blast2go	Metabolic pathways	01100	92%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	92%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	92%
Blast2go	DNA clamp loader activity	GO:0003689	Molecular Function	92%
Blast2go	ATP binding	GO:0005524	Molecular Function	92%
Blast2go	DNA replication factor C complex	GO:0005663	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Replication factor C, C-terminal domain	IPR013748	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9V5

Fln msg:

Fln protein: MAGSSAPLSSSAGNYDLPWVEKYRPTKVSDIVGNQDAISRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGSNYREGVIELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTGGAQQALRRTMEIFSNSTRFALACNTSAKIIEPIQSRCAIVRFTKLSDQEILGRLMRVVEAEKVAYIPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQENVFKVCDQPHPLHVKSMVQNVLEGNFDEACSRLKSLYDLGYSATDIITTLFRVIKNYDMPEYLKLEFIRETGFAHMRISDGVGSLLQLSGLLAKLSIVRDTSKAA*

Protein Length: 337

Fln nts: CGGGAATCAAAAGCGTCTCTGAATCCCTTTTATGGGGGGAACAATTCGTTCAAGCGGAGGTCTGAACAAACTCCGAACCCTCCACAACGCTTCGACTCCGCATAGGGGTAGATGTTCAGAAAAAACGGTTGATAACGTACCCTTTTCTTAGTTTTCAGTTTTCCTTTGCCACCAGTGCTGTGAAAGAAGGGAAGTTCAA_-_ATGGCTGGCTCATCCGCCCCACTCTCATCATCCGCAGGCAACTATGATTTGCCGTGGGTTGAAAAATACAGGCCCACTAAGGTATCTGATATTGTTGGCAACCAGGACGCCATTTCAAGGCTTCAAGTCATTGCCAGGGATGGCAACATGCCCAACCTTATCTTAGCTGGTCCTCCTGGAACAGGGAAGACCACCAGTATACTGGCACTTGCTCATGAACTTCTGGGAAGCAATTATAGAGAAGGTGTTATAGAACTCAATGCCTCTGATGACAGGGGTATCGATGTTGTGAGAAACAAGATCAAAATGTTTGCACAGAAAAAGGTAACACTCCCTCCAGGGCGGCACAAGATAATAATTTTGGATGAGGCTGATAGCATGACAGGTGGAGCGCAACAAGCTCTTAGGCGCACCATGGAAATCTTCTCCAATTCAACAAGATTTGCACTTGCATGTAACACTTCAGCGAAAATCATCGAGCCCATACAGAGCAGATGTGCTATTGTGCGTTTCACAAAGTTATCAGACCAGGAGATCCTTGGGCGCCTTATGCGAGTAGTTGAAGCTGAAAAGGTAGCTTATATACCTGAAGGACTGGAAGCAATTATATTCACAGCTGATGGAGACATGAGGCAAGCTTTGAATAACTTGCAAGCCACATACAGTGGTTTTCAGTTTGTCAACCAAGAGAATGTGTTTAAGGTTTGTGATCAACCTCATCCTTTACATGTGAAAAGCATGGTCCAGAATGTGCTGGAAGGGAACTTTGATGAGGCCTGTAGTCGTCTAAAGAGCCTGTATGATCTTGGTTATTCTGCAACTGACATCATTACAACACTTTTCCGTGTGATAAAAAATTATGATATGCCTGAGTATCTGAAGCTGGAATTTATAAGGGAAACTGGTTTTGCACATATGAGGATATCAGATGGAGTCGGTTCACTTCTCCAATTATCTGGTCTTCTTGCCAAGTTATCCATTGTCCGGGATACATCCAAAGCTGCATAG___TTATGTTTGGATTTGGTAATGTGTGTTTGTTTAGGAAATGCAAAGCTAGTCGTGAAAGGTTAGATTGTGTGAGAAACAGATTGTCTAAGAGCATGGGTACGATGAAATCGATGAGAAGCATGCCCTGCATATGCTATAATCCAAATTGTTTTCCAGCCTTAAAAAACCTTTCATTATTTTTGTGTTTAACAATGAGTTTGAGTTGTCTAATTTAGCTCAGCTAATCCTATTCTGGGGATAAAGATTTCTATGAAAGTTATTCTGTCAATTTTGAAGTGGGTTGAATTTATTGCTAAATTTTGCTGATTAGCATTGATTCTCTATATGAAGCAGGTGCAATCAGTGCTGCCAAAAGCCTATTTTGATAAAAGAAAGCTATTTCTATCACTGGAAGTAGCATAAGAATCGAAGTTTGGCTCCTTGAACATAATTATTCTACTCAGGTTGCACAGTTCATAAAGACAATAACATAGTTAGTTAGCATGTGTGTGCATATGTGACTTTCATAACTCATACATGCAGACATAGAAGTGCCAGGAAACATACTCAATACAATGTTCATTTGTATTATGTGTTGATAGTGATGCTACAATTCAATTTTTAGGGGGTCTTTATATCCATGAGGCAGCACACTCTAAGACTACGTTGGGAATGCATTGGTTTGGCGATGTACACGTTACAGTGCTCAGAATGCACATATGTTATACTAATAAACTTAAAAGTACATGTGTGCATAATTACCTTAT

Fln Alignment:

Contig6794___NYDLPWVEKYRPTKVSDIVGNQDAISRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGSNYREGVIELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTGGAQQALRRTMEIFSNSTRFALACNTSAKIIEPIQSRCAIVRFTKLSDQEILGRLMRVVEAEKVAYIPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQENVFKVCDQPHPLHVKSMVQNVLEGNFDEACSRLKSLYDLGYSATDIITTLFRVIKNYDMPEYLKLEFIRETGFAHMRIXXXXXXXXXXXXXXXXXSIVRDTSKAA
D5A9V5______________NYDLPWVEKYRPSKVSDIVGNQDALSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGSNYKEGVIELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTGGAQQALRRTMEIFSNSTRFALACNTSAKIIEPIQSRCAIVRFSKLSDQEILGRLMRVVEAEKVAYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQENVFKVCDQPHPLHVKSMVQNVLEGNFDEACSRLKNLYDLGYSATDIITTLFRVIKNYDMPEYLKLEFIRETGFAHMRISDGVGSLLQLSGLLAKLSIVRDTSKAA

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
214	12		87		0.992554
416	14			85	0.993533
417	14		71		0.984337
418	28	71			1.0
420		14	14	71	0.984337
423	14		14	71	0.984337
424	85	14			0.993533
425		14		85	0.993533
426	85			14	0.993533
427			71	28	1.0
428	85		14		0.993533
431	71	14		14	0.984337
432		14	14	71	0.984337
434	71	14		14	0.984337
437		16	83		0.994512
439		16		83	0.994512
440	83		16		0.994512
504	33			66	0.997452
1384	72		27		1.0
1410	11		88		0.923564
1412	12	87			0.992554
1413			87	12	0.992554
1414		87		12	0.992554
1424	87		12		0.992554
1526	10	90			0.90298
1527			10	90	0.90298
1529		90	10		0.90298
1530	10	90			0.90298
1738		30	69		1.0
1770	8	25		66	1.0
1844		85		14	0.993533
1845			14	85	0.993533
1847		85	14		0.993533
1848		85		14	0.993533
1849		85	14		0.993533
1850	14	85			0.993533
1851		14		85	0.993533
1856		14	85		0.993533
1857	14		85		0.993533
1864	85	14			0.993533
1869		50		50	1.0
1872			85	14	0.993533
1876			85	14	0.993533
1879	14			85	0.993533
1881	14		85		0.993533
1884		14	85		0.993533
1885		14		85	0.993533
1886	14			85	0.993533
1887	14			85	0.993533
1889			14	85	0.993533
1893	42		57		1.0
1896		85	14		0.993533
1919		66		33	0.997452
1920		66		33	0.997452
1921		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain