SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6785

Length: 1464 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6785

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] dbj\|BAB02454.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAU94380.1\| At3g19300 [Arabidopsis thaliana] gb\|AAV59270.1\| At3g19300 [Arabidopsis thaliana] gb\|AEE76221.1\| protein kinase family protei	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	probable receptor-like protein kinase at1g49730-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	77%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	TNFR/CD27/30/40/95 cysteine-rich region	IPR001368	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAA3

Fln msg: your sequence is shorter than subject: 407 - 458

Fln protein: LLFLLILLIHRKMRELENSDTANHTQWNRTLSSHTRRNLHEWNKGPPSTFRRFSRREIRRATDDFSTIIGKGGFGTVYKARFKDGLVAAVKRMNKIAQQDEFCKEMELLGRLHHRHLVTLIGFCAEQHERFLVYEYMENGSLKEHLQAPIKTPLNWRIRIQIAIDVAAALEYLHFYCDPPLCHRDIKSSNILLDENFVAKVSDFGLAHAAPCGASNFEPVNTDVRGTPGYMDPEYLVTQELTEKSDVYSYGVLLLEIITARQAVQENKNLVEWAQKYILEDSNLSEMVDPNLQNMYDYEQLQSFVTIVRMCTQREGKSRPSIRQVLQLMYDRLDITCPNSALIAPEEDEDEDDNARSMSKGKIQIMSFVNGNNFSGELRCIESSPKSSVSYCSKSFLLESTSPSSQ*

Protein Length: 408

Fln nts: CTTCTATTTCTATTGATACTTTTGATACACAGGAAAATGAGAGAATTGGAGAACTCAGATACTGCCAATCACACTCAATGGAATAGAACTTTGAGTTCACATACACGCAGGAATTTGCATGAATGGAACAAAGGGCCACCGTCCACCTTTAGACGTTTCAGCCGCAGGGAGATTAGAAGGGCAACAGATGATTTCAGCACGATTATTGGCAAGGGAGGATTTGGCACTGTTTATAAAGCCCGATTTAAAGATGGACTTGTTGCCGCTGTGAAGCGAATGAACAAGATTGCTCAACAAGATGAATTCTGTAAAGAGATGGAGCTGTTAGGGCGGCTGCATCATCGGCATCTTGTGACATTAATAGGATTTTGTGCAGAGCAGCATGAAAGGTTTCTCGTTTATGAATACATGGAAAATGGAAGTCTAAAAGAGCATCTTCAAGCTCCCATAAAGACTCCCTTGAATTGGCGGATTAGAATTCAAATTGCCATAGATGTGGCTGCGGCTTTGGAGTACCTTCATTTTTATTGTGATCCACCTTTATGTCACAGAGACATTAAATCGAGTAATATTTTGCTGGACGAGAACTTTGTTGCTAAGGTATCTGATTTTGGTCTTGCTCATGCTGCACCTTGTGGTGCCAGCAATTTTGAACCAGTTAATACAGATGTTCGTGGAACCCCAGGATACATGGACCCAGAGTACCTTGTCACTCAAGAGTTAACAGAAAAAAGTGATGTATATAGCTATGGTGTGTTACTTCTTGAAATCATCACTGCTCGACAGGCAGTTCAAGAGAACAAAAACCTGGTAGAATGGGCTCAAAAATACATTTTGGAGGATTCCAATTTGTCTGAGATGGTAGATCCTAATTTGCAAAATATGTATGATTACGAACAACTTCAAAGTTTTGTCACTATTGTAAGAATGTGCACTCAAAGGGAGGGTAAATCAAGGCCTTCCATAAGGCAAGTTCTGCAACTTATGTATGATAGACTAGACATAACCTGTCCTAATTCTGCATTAATAGCTCCAGAAGAAGATGAAGATGAGGACGATAATGCCAGGAGCATGAGCAAGGGGAAGATACAGATAATGTCATTTGTAAATGGAAACAACTTCAGTGGTGAGCTAAGGTGCATAGAGTCTTCTCCCAAATCTTCAGTATCTTATTGCAGCAAAAGTTTTCTCCTTGAATCCACTTCTCCCAGCTCACAGTGA___AAGCACGGAATTTTGTACTAATTTTTAAAATCAGCTCGCTTCACATTGCCAAAAGATCAGCTTTGCAAGATTGCTGTTAACTACTCTTGCATCTTTTTTCTGTCTATGAATATCTGTCATTTTCCCGCAGCATTGTTTGGAACTTGCACAGGTCAGAATTTGATTCTTGGAATGAAGTATTGGTAATCTTGTATGATACAATTATGAATATCTGTAAGATTCCAGGTAATCAAGTTCAAATTT

Fln Alignment:

Contig6785___ATDDF--STIIGKGGFGTVYKARFKD-GLVAAVKRMNKIAQQD--EFCKEMELLGRLHHRHLVTLIGFCAEQHERFLVYEYMENGSLKEHLQ--APIKTPLNWRIRIQIAIDVAAALEYLHFYCDPPLCHRDIKSSNILLDENFVAKVSDFGLAHAAPCGASNFEPVNTDVRGTPGYMDPEYLVTQELTEKSDVYSYGVLLLEIITARQAVQENK-----NLVEWAQKYILEDSNLSEMVDPNLQNMYDYEQLQSFVTIVRMCTQREGKSRPSIRQVL
D5AAA3______________ATKNFRPECLLGEGGFGRVYRGRLESTGQAVAVKQLDRNGVQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKEPLDWKTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLDEGYHSKLSDFGLAKLGPVGDKTH--VSTRVMGTYGYCAPEYAMTGQLTIKSDVYSFGVVLLELITGRKAIDNSRSAGENNLVAWARPLFKDRRKFSQMADPLLQCRYPMRGLYQALAVAAMCVQEQATMRPLIADVV

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
701		85	14		0.993533
702		83		16	0.994512
703	83		16		0.994512
704	16		83		0.994512
705	83	16			0.994512
706		16	83		0.994512
708	83			16	0.994512
709		83	16		0.994512
710		85	14		0.993533
711		14		85	0.993533
725	16			83	0.994512
726		16		83	0.994512
728	83			16	0.994512
729		83		16	0.994512
750		20	80		0.995493
751	20	80			0.995493
753	80			20	0.995493
814		16	83		0.994512
1118	88	11			0.923564
1120		88		11	0.923564
1121	88			11	0.923564
1147	87			12	0.992554
1152		87	12		0.992554
1153	14			85	0.993533
1155		85	14		0.993533
1156	14			85	0.993533
1165			14	85	0.993533
1171	85		14		0.993533
1172	14			85	0.993533
1174		14		85	0.993533
1178			14	85	0.993533
1181	85			14	0.993533
1183		83		16	0.994512
1184	83	16			0.994512
1186	83	16			0.994512
1187	80			20	0.995493
1188		20	80		0.995493
1189	20			80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain