SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6776

Length: 1448 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene6776 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin n=6 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	expansin	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	plant-type cell wall organization	GO:0009664	Biological Process	88%
Blast2go	extracellular region	GO:0005576	Cellular Component	88%
Blast2go	membrane	GO:0016020	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXU9

Fln msg:

Fln protein: MGALGFLVVGLLLVTTRATMASSWISAHATFYGGSDASGTMSGACGYGNLYSQGYGANTAALSTALFNDGLSCGACFQVMCNDDPQWCLRGSVVVTATNFCPPGGWCNPPLRHFDLSQPVFLKIAKYKAGVVPILYRRVPCHKKGGIRFTINGHSYFNLVLISNVGGAGDVHGVWIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRSVTSYNVASVNWQFGQTFSGAQFH*

Protein Length: 241

Fln nts: ATGGGGACTCCCCGCCTCCTCTTCCTACTTAATTCCTTCAACCCCTCTCCGACTCATCCCATCTGCTTCTATTTCTCAGAAAATCTCTGTGCATGATTGAGTTTTGATTGATTGATTGTATCGTCACTTACCTATAATTTCTGGAGGGTCAGTCACTGCTGTTGATATGCCTTTCATGATTGGATTGCATTGTATGGTTTGGAATTCTCACCCGAATCAATAGCCTTACTGGACCGCTGAATATGGGTATGTCTTTCTGCTGCAGGAA_-_ATGGGTGCCCTGGGATTTTTGGTGGTGGGTTTGTTGTTAGTAACCACAAGAGCTACAATGGCTTCAAGCTGGATAAGTGCGCATGCAACTTTTTATGGCGGAAGTGATGCCTCTGGCACAATGAGTGGAGCTTGTGGGTATGGAAATCTATACAGCCAAGGCTATGGCGCCAACACAGCAGCTCTGAGCACGGCCCTTTTCAACGATGGCCTCAGCTGTGGAGCCTGCTTTCAAGTCATGTGTAATGACGACCCACAATGGTGTCTAAGAGGATCTGTTGTGGTCACTGCTACTAACTTCTGTCCACCTGGGGGATGGTGCAATCCTCCTTTGCGGCACTTTGATCTCTCACAGCCTGTGTTTTTGAAGATTGCTAAGTACAAAGCTGGAGTAGTACCCATCTTGTACAGACGCGTCCCTTGTCACAAAAAGGGAGGAATCCGGTTTACAATCAATGGCCATTCATACTTCAACTTAGTGCTCATCAGCAACGTGGGAGGAGCAGGGGACGTCCATGGCGTTTGGATAAAAGGGTCAAGGACTGGTTGGCAACCAATGTCACGCAACTGGGGACAAAATTGGCAAAGCAACTCCTACCTCAATGGCCAGAGCCTCTCCTTCAAGGTCACCACCAGCGATGGCAGAAGTGTAACTTCGTACAATGTAGCTTCTGTAAATTGGCAGTTCGGTCAGACTTTCAGTGGAGCTCAGTTCCATTAA___GGAATATAGTTCCTCTGCGGATGCGCTGATGCTCTGGACTTCTGAACTTATTAACTCTTGTGTATTGTCATTGATGTTGAATGCTGAGGTGGGTTCCAAGTCCAAGATCCACCCGCTTCATAGAATAAGTATTTTTTATTATCATGATCAGTGTGTATTGCCGACGCTGGCGTCTTCTACCTTAAGTAAACTTACTACCCACTAAGAGTGCTTCCATATAGCTTCAAATCTGAAGCTGATGTGTTCAGAGATACGTGATACGGATTGTCCTCTGGGTATCCATGTAGCTTTATATGAGGATGACGCGTTATTATCATGTATTGTCATGTGCATCCATGTGGATGAGGATGATATATGGATAAATATTATCCTTGGTATGTAATTGACTTATAACATCTATCTATATATTGAAGTTGGATCTTGGTTATATTTCTATTACATACAAGGATAATATTTATCC

Fln Alignment:

Contig6776___TRATMASSWISAHATFYGGSDASGTMSGACGYGNLYSQGYGANTAALSTALFNDGLSCGACFQVMCNDDPQWCLRGSVVVTATNFCPP--------GGWCNPPLRHFDLSQPVFLKIAKYKAGVVPILYRRVPCHKKGGIRFTINGHSYFNLVLISNVGGAGDVHGVWIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRSVTSYNVASVNWQFGQTFSGAQ
A9NXU9______________TMARVAHGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGACYAIRCNDDPQWCLPGAIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSEPVFQHIAKYRAGIVPVMYQRVPCHRSGGIRFTVNGHSYFNLVLITNVGGAGDIHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQGLSFKVTTSDGRTVTSYNVAPSNWQFGQTFAGAQ

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1397	33			66	0.997452
1398			66	33	0.997452
1400		33	66		0.997452
1401		33		66	0.997452
1403		33	66		0.997452
1404	33		66		0.997452
1406			66	33	0.997452
1407	33	33		33	0.997753

SSRs (tot: 1)

Start position	End position	Sequence	Length
1331	1345	CAAT CAAT CAAT CAA	15

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain