SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6753

Length: 3373 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene6753
CGGGAATGGAAGGGCATTGAAAGCGGGTTTTATAAAGTATGTGATACAATGGCTGTCACTCAATCTCTCCTATTCGCATATATCGCGTCGTTCCCAGCTGCATTTATTGGCAACCCTCGACCCGTTCCTCCGTTCTCTTCAACTCTCGGAGGTTGCTACCTTCATGTTCCTGCTCTGTGAAGTCTTCCACCACTATTTTCACTGCTGCTCGACCTTCAGCAGGCATCATATATAAAAGAACAGTTTCTTCAAATCTCCGTTGCGCGAGTACGAGTCTGAACGAGGTGCAAAGAATGGCCGGAGGAGTGGAGATATTGGAGGGAAACCCACTGCTACAAGAGGGACCCTTTCCTCGTTTCGATGCGGTGGAGCCGAAGCACGTCTGCCCTGGCATCAGGGCTGTCTTGCAACAACTGGAAAATGCTTTAGCTGAATTGGAAAGAACAGTACAACCAACTTGGTCAGGACTAGTTGAGCCTTTAGAGAAAATTGTGGATCGTCTCTCCGTTGTATGGGGAGTTGTAAACCATCTTAAATCTGTCAAAGATTCTGAAGATATTCGTTCAGCTATTGAGGAAGTGCAGCCTGAAAAAGTGACATTTCAACTTAGACTAGGACAAAGCAAACCTATCTTCAATGCATTCAAATCTATTCAGGAAGGTTCTATTTGGGAAACGCTGACTGAAGCCCAAAAACGGATAGTTGAAGTTGAGATTAAGGAAGCCACTCTTAATGGTGTTGCTTTGGAAGGGGATGCTAAAGTGCGCTTCAATGAAATCCAACAGGAGTTAGAAAAGCTTTCATTAAAATTTAATGAGAACGTTTTGGATGCAACAAAAAGCTTTGAGAAGTTAATAACTGACAAGAAAGATATTGAGGGATTACCACTGACTGCTCTTGGTCTCGCTGCTCAAACAGCAGCATCTAAGGGTTATGAAGGTGCAACTGCCGAGAATGGGCCATGGATTATTACATTAGATATTCCAAGCTACCTACCAGTTCAACAGCATGCACGTGATCGCAGTCTTCGTGAGGAGCTCTATCGTGCTTATGTTACTCGTGCCTCTACTGGAAAGTTAGATAACACTCCAGTTATTGATCAGATTTTGAGACTTCGATTAGAGAGAGCTAAATTGCTCGGATACAATAATTATGCAGAGGTAAGTATGGCCATGAAAATGGCAACTGTTGAGAAAGCTGAAGAACTCTTAGAAAATATTCGAAGTGCTTCATGGGATTCAGCTGTGCAAGACTTGGAGGATTTGAAGACCTTTGCCAAAGAGCAACATGCTGAAGAAGCTAATGATATGTGCCATTGGGATATTAGCTTTTGGAGTGAGCGGCTTCGCGAGGCTAAGTACGACATAAATGAGGAAGAGTTGCGACCGTTTTTCTCATTGCCAAAAGTAATGGAAAGCCTTTTCACCCTTGCAAAAATGCTTTTTGAAATTGATATTGAATCAGCGGATGGTCTCGCTCCAGTGTGGGACAAGGATGTAAGATTTTATGCAGTAAAAGACTTATCTGGAAGTCCAGTTGCGTATTTCTATTTTGATCCATACTCAAGGCCCTCAGAGAAGCGAGGTGGTGCATGGATGGATGAAGTTTTTGGCCGAAGTCGTGTGCTTGCGCAGGATGGTACTTCAGTCCGGCTACCCATAGCACACATGGTTTGCAACCAGACACCACCGGTTGGAGATAAACCAAGCTTAATGACTTTCCGTGAGGTTGAGACTGTATTCCATGAATTTGGTCATGCACTACAGCATATGCTTACCGAGCAAGATGAAGGTTTAGTAGCAGGCATTCGTGGTGTGGAGTGGGATGCAGTCGAACTTCCTTCTCAGTTTATGGAAAACTGGTGTTACCACAGAGACACACTTATGGGCATGGCTAAGCATTATGAAACTGGTGAGACACTCTCTGAAGAAATATATTTGAAGCTTGTAGCAGCAAGAACATTCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCGAGTATTGATCTAGAACTGCATTCAAAGTATGTTCCTGGTGGTTCGGAGACTATTTTTGATGTTGATCAGAGGGTAGCTCAGAGGACACAAGTTGTTCCACCGTTGCAGGAAGATAGGTTCTTATGCAGTTTCCTTCATATCTTTGCAGATGCATATGCAGCTGGTTACTATAGCTACCAGTGGGCTGAGGTTCTGTCTGCAGATGCATTCTCAGCATTTGAAGAGGTTGGACTGGATAATGAGAAGGCTGTCAAGGAGACAGGGAAAAGATTTAGGGATACTGTTCTTGCTTTGGGTGGTGGCCGGCCACCATTGCAGGTTTTCATAGATTTCCGGGGTAGAGAGCCATCTACGGATCCACTCCTCAGGCATAATGGCTTGCTGCCAACAGCTGCAGCAGCTTAAAGAGGAATCTGTGAATGAAAAATGCAATTAGAATGGTATCCTTTCTGTATATGCAGCATTTCCATTTACGACTGTCATTTGCACGTCCTTGTTACATTTGTTATGTAGTTCGTCTTACAAAATGCTGCAGTGGTGTCTTGGAGAAACAAAGTACATGTTCTTTTGCGAATAAGTTGGCTGTCTTTTTATATAAAGAAAATGATAAAAAATTCACTGACAATTAAATATAAGCTGTAAAACAGGATTGAGGATAAAGCATGAAACTAGACATGTAAGAGCTACAATGTAGATTGTTGTAAACTTTACGAGAAACTAACGAAAAACAATTCTATTTTTATTTAAGGGGATAGGTCATTTTATAGTTTCAGTGATTTGAATCTAATTCCACTGCATTTCCTCGCAAACTGGCAGTCAAATTGTAATCCCTCTTTCGGTGACAGGCTGGCAGGTTTTTCATTCTAATACAAACATGATTATCATAATTCGATTAGTTCATGGCGTTTTCTTTGCCAAAAGCTCTGCATAATTGTCCAGATTTTGGCACAAATGGTAACTCGCAATTAATTTTCCTTAGGTTTCCACGTATTCTTCCAACTTTGTTGAATTTTCGAGTAGGATTTTGCATATTTTTTTAGAGATTGTTAGGTAAGGACTACAAGGAGAAGAGAAATAAATGGATAAAATGACAGGTTGCATTAGAATGTGAAAGACATTTCATTTATGATCGTATAATTTACAACTGTTGTCTTGTAAGTTTATGCACATTAACTGTATAATATAGTTGCTTGAATCGTATGTTACTAGAAACTCCATCCCTAGTCACTGGAAACACGTTTCGGCATTTCAGAATGTACAAAACGCGTTTCAGGTTTTTGAAATGCTGTATGGGCCATTTAGGCCGGTGTGTCGGCCATTTTAGTTGGTGTATCGACCATTTACCATTTAACGAAATTTTGACATATTTA

Ace file of the UniGene sp_v2.0_unigene6753 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Oligopeptidase A, putative n=1 Tax=Ricinus communis RepID=B9SMK4_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	oligopeptidase a	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	86%
Blast2go	proteolysis	GO:0006508	Biological Process	86%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	86%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	86%
Blast2go	cytosol	GO:0005829	Cellular Component	86%
Blast2go	apoplast	GO:0048046	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Peptidase M3A/M3B	IPR001567	-	-
Sma3		IPR017442	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADL7

Fln msg: your sequence is longer than subject: 705 - 413

Fln protein: MAGGVEILEGNPLLQEGPFPRFDAVEPKHVCPGIRAVLQQLENALAELERTVQPTWSGLVEPLEKIVDRLSVVWGVVNHLKSVKDSEDIRSAIEEVQPEKVTFQLRLGQSKPIFNAFKSIQEGSIWETLTEAQKRIVEVEIKEATLNGVALEGDAKVRFNEIQQELEKLSLKFNENVLDATKSFEKLITDKKDIEGLPLTALGLAAQTAASKGYEGATAENGPWIITLDIPSYLPVQQHARDRSLREELYRAYVTRASTGKLDNTPVIDQILRLRLERAKLLGYNNYAEVSMAMKMATVEKAEELLENIRSASWDSAVQDLEDLKTFAKEQHAEEANDMCHWDISFWSERLREAKYDINEEELRPFFSLPKVMESLFTLAKMLFEIDIESADGLAPVWDKDVRFYAVKDLSGSPVAYFYFDPYSRPSEKRGGAWMDEVFGRSRVLAQDGTSVRLPIAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTEQDEGLVAGIRGVEWDAVELPSQFMENWCYHRDTLMGMAKHYETGETLSEEIYLKLVAARTFRAASQNLRQIRFASIDLELHSKYVPGGSETIFDVDQRVAQRTQVVPPLQEDRFLCSFLHIFADAYAAGYYSYQWAEVLSADAFSAFEEVGLDNEKAVKETGKRFRDTVLALGGGRPPLQVFIDFRGREPSTDPLLRHNGLLPTAAAA*

Protein Length: 706

Fln nts: CGGGAATGGAAGGGCATTGAAAGCGGGTTTTATAAAGTATGTGATACAATGGCTGTCACTCAATCTCTCCTATTCGCATATATCGCGTCGTTCCCAGCTGCATTTATTGGCAACCCTCGACCCGTTCCTCCGTTCTCTTCAACTCTCGGAGGTTGCTACCTTCATGTTCCTGCTCTGTGAAGTCTTCCACCACTATTTTCACTGCTGCTCGACCTTCAGCAGGCATCATATATAAAAGAACAGTTTCTTCAAATCTCCGTTGCGCGAGTACGAGTCTGAACGAGGTGCAAAGA_-_ATGGCCGGAGGAGTGGAGATATTGGAGGGAAACCCACTGCTACAAGAGGGACCCTTTCCTCGTTTCGATGCGGTGGAGCCGAAGCACGTCTGCCCTGGCATCAGGGCTGTCTTGCAACAACTGGAAAATGCTTTAGCTGAATTGGAAAGAACAGTACAACCAACTTGGTCAGGACTAGTTGAGCCTTTAGAGAAAATTGTGGATCGTCTCTCCGTTGTATGGGGAGTTGTAAACCATCTTAAATCTGTCAAAGATTCTGAAGATATTCGTTCAGCTATTGAGGAAGTGCAGCCTGAAAAAGTGACATTTCAACTTAGACTAGGACAAAGCAAACCTATCTTCAATGCATTCAAATCTATTCAGGAAGGTTCTATTTGGGAAACGCTGACTGAAGCCCAAAAACGGATAGTTGAAGTTGAGATTAAGGAAGCCACTCTTAATGGTGTTGCTTTGGAAGGGGATGCTAAAGTGCGCTTCAATGAAATCCAACAGGAGTTAGAAAAGCTTTCATTAAAATTTAATGAGAACGTTTTGGATGCAACAAAAAGCTTTGAGAAGTTAATAACTGACAAGAAAGATATTGAGGGATTACCACTGACTGCTCTTGGTCTCGCTGCTCAAACAGCAGCATCTAAGGGTTATGAAGGTGCAACTGCCGAGAATGGGCCATGGATTATTACATTAGATATTCCAAGCTACCTACCAGTTCAACAGCATGCACGTGATCGCAGTCTTCGTGAGGAGCTCTATCGTGCTTATGTTACTCGTGCCTCTACTGGAAAGTTAGATAACACTCCAGTTATTGATCAGATTTTGAGACTTCGATTAGAGAGAGCTAAATTGCTCGGATACAATAATTATGCAGAGGTAAGTATGGCCATGAAAATGGCAACTGTTGAGAAAGCTGAAGAACTCTTAGAAAATATTCGAAGTGCTTCATGGGATTCAGCTGTGCAAGACTTGGAGGATTTGAAGACCTTTGCCAAAGAGCAACATGCTGAAGAAGCTAATGATATGTGCCATTGGGATATTAGCTTTTGGAGTGAGCGGCTTCGCGAGGCTAAGTACGACATAAATGAGGAAGAGTTGCGACCGTTTTTCTCATTGCCAAAAGTAATGGAAAGCCTTTTCACCCTTGCAAAAATGCTTTTTGAAATTGATATTGAATCAGCGGATGGTCTCGCTCCAGTGTGGGACAAGGATGTAAGATTTTATGCAGTAAAAGACTTATCTGGAAGTCCAGTTGCGTATTTCTATTTTGATCCATACTCAAGGCCCTCAGAGAAGCGAGGTGGTGCATGGATGGATGAAGTTTTTGGCCGAAGTCGTGTGCTTGCGCAGGATGGTACTTCAGTCCGGCTACCCATAGCACACATGGTTTGCAACCAGACACCACCGGTTGGAGATAAACCAAGCTTAATGACTTTCCGTGAGGTTGAGACTGTATTCCATGAATTTGGTCATGCACTACAGCATATGCTTACCGAGCAAGATGAAGGTTTAGTAGCAGGCATTCGTGGTGTGGAGTGGGATGCAGTCGAACTTCCTTCTCAGTTTATGGAAAACTGGTGTTACCACAGAGACACACTTATGGGCATGGCTAAGCATTATGAAACTGGTGAGACACTCTCTGAAGAAATATATTTGAAGCTTGTAGCAGCAAGAACATTCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCGAGTATTGATCTAGAACTGCATTCAAAGTATGTTCCTGGTGGTTCGGAGACTATTTTTGATGTTGATCAGAGGGTAGCTCAGAGGACACAAGTTGTTCCACCGTTGCAGGAAGATAGGTTCTTATGCAGTTTCCTTCATATCTTTGCAGATGCATATGCAGCTGGTTACTATAGCTACCAGTGGGCTGAGGTTCTGTCTGCAGATGCATTCTCAGCATTTGAAGAGGTTGGACTGGATAATGAGAAGGCTGTCAAGGAGACAGGGAAAAGATTTAGGGATACTGTTCTTGCTTTGGGTGGTGGCCGGCCACCATTGCAGGTTTTCATAGATTTCCGGGGTAGAGAGCCATCTACGGATCCACTCCTCAGGCATAATGGCTTGCTGCCAACAGCTGCAGCAGCTTAA___AGAGGAATCTGTGAATGAAAAATGCAATTAGAATGGTATCCTTTCTGTATATGCAGCATTTCCATTTACGACTGTCATTTGCACGTCCTTGTTACATTTGTTATGTAGTTCGTCTTACAAAATGCTGCAGTGGTGTCTTGGAGAAACAAAGTACATGTTCTTTTGCGAATAAGTTGGCTGTCTTTTTATATAAAGAAAATGATAAAAAATTCACTGACAATTAAATATAAGCTGTAAAACAGGATTGAGGATAAAGCATGAAACTAGACATGTAAGAGCTACAATGTAGATTGTTGTAAACTTTACGAGAAACTAACGAAAAACAATTCTATTTTTATTTAAGGGGATAGGTCATTTTATAGTTTCAGTGATTTGAATCTAATTCCACTGCATTTCCTCGCAAACTGGCAGTCAAATTGTAATCCCTCTTTCGGTGACAGGCTGGCAGGTTTTTCATTCTAATACAAACATGATTATCATAATTCGATTAGTTCATGGCGTTTTCTTTGCCAAAAGCTCTGCATAATTGTCCAGATTTTGGCACAAATGGTAACTCGCAATTAATTTTCCTTAGGTTTCCACGTATTCTTCCAACTTTGTTGAATTTTCGAGTAGGATTTTGCATATTTTTTTAGAGATTGTTAGGTAAGGACTACAAGGAGAAGAGAAATAAATGGATAAAATGACAGGTTGCATTAGAATGTGAAAGACATTTCATTTATGATCGTATAATTTACAACTGTTGTCTTGTAAGTTTATGCACATTAACTGTATAATATAGTTGCTTGAATCGTATGTTACTAGAAACTCCATCCCTAGTCACTGGAAACACGTTTCGGCATTTCAGAATGTACAAAACGCGTTTCAGGTTTTTGAAATGCTGTATGGGCCATTTAGGCCGGTGTGTCGGCCATTTTAGTTGGTGTATCGACCATTTACCATTTAACGAAATTTTGACATATTTA

Fln Alignment:

Contig6753___MAMKMATVEKAEELLENIRSASWDSAVQDLEDLKTFAKEQHAEEANDMCHWDISFWSERLREAKYDINEEELRPFFSLPKVMESLFTLAKMLFEIDIESADGLAPVWDKDVRFYAVKDLSGSPVAYFYFDPYSRPSEKRGGAWMDEVFGRSRVLAQDGTSVRLPIAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTEQDEGLVAGIRGVEWDAVELPSQFMENWCYHRDTLMGMAKHYETGETLSEEIYLKLVAARTFRAASQNLRQIRFASIDLELHSKYVPGGSETIFDVDQRVAQRTQVVPPLQEDRFLCSFLHIFADAYAAGYYSYQWAEVLSADAFSAFEEVGLDNEKAVKETGKRFRDTVLALGGGRPPLQVFIDFRGREPSTDPLLRHNGLLPTAAAA
D5ADL7______________MAMKMATVEKAEELLEKIRSASWDSAVQDLEDLKIFAKEQHAEEANDMCHWDISFWSERLREAKYDINEEELRPFFSLPKVMESLFALAKTLFEIDIEPVDGLAPVWNKDVRFYAVKDLSGSPVAYFYFDPYSRPSEKRGGAWMDEVFGRSRVLAQDGSSVRLPIAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDEGLVAGIRGVEWDAVELPSQFMENWCYHRDTLMGIAKHYKTGETLSEEIYLKLVAARTFRAASQNLRQIRFASSDLELHSKYVPGGSETIFDVDQRLAQRTQVVPPLQEDRFLCSFLHIFAGGYGAGYYSYKWAEVLSADAFSAFEDAGLENEKAVKETGKRFRDTILALGGGRPPLQVFMDFRGREPSTDPLLRHNGLLPTTAAS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
2577	66			33	0.997452
2780	14		85		0.999981
2784		83		16	0.999991
2920	75			25	0.996473
2921			75	25	0.996473
2954			33	66	0.997452
3216	85		15		1.0
3246		83		16	1.0
3307	73	13		13	0.999956
3308		13	86		0.999973
3309	13	13			0.999956
3310		13	86		0.999973
3311	86			13	0.999973
3312			86	13	0.999973
3314		15	84		0.999986
3316			15	84	0.999986
3317		16		33	1.0
3318		16	83		0.999991
3320	16		83		0.999991
3321			16	83	0.999991
3323	83			16	0.999991
3327	18	81			0.999994
3329	81		18		0.999994
3330	44			55	1.0
3331			44	55	1.0
3334	55	44			1.0
3335	44			55	1.0
3339		50		50	1.0
3340	50		50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain