SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6739

Length: 949 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene6739

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin n=3 Tax=Zea mays RepID=B6SMJ0_MAIZE	-	-	1.0e-20	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	calcium binding protein	-	-	0.0	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8C1

Fln msg:

Fln protein: MVSDVIIRNPAVSNVCAMPMYWSIIISMALSWVRKFYSFYNYYVYVWVSEMMKTMFPQLCNPKNPDVIRAIGKYQSSGGMIDETSSDDVNKRYTAFVHTWDLSRIFNALDSDGDGMVTAEDVQGLLEKVGIQNISDDSMKIMMGSLEHMSFKDFCGLLVILCGEADKHAETEEKVLSEELVEAFSVFDKNGDGFISPWELQKVLLSLGLKEGQDLGNCEIMISRFDRNSDGRIDFEEFENMMTMTDKSLQMC*

Protein Length: 254

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTGTAACGCCCAACATACACCGCCCTTTTTTCTTCTCTGATTTTTCCATTGCAGGAATTATTGAATTGGCCCTTTTTTCTTCTTTGCTTCTTCCATTGCAGGAATTATTGAATTGAGGCATCTCATTCATATACCAAAC_-_ATGGTGTCTGATGTTATCATCAGAAACCCTGCAGTTTCAAATGTTTGTGCCATGCCCATGTACTGGAGCATTATTATATCCATGGCCCTGAGTTGGGTACGGAAGTTTTATAGCTTCTACAACTACTATGTTTATGTTTGGGTTTCTGAGATGATGAAAACTATGTTTCCTCAACTTTGCAATCCAAAAAACCCTGATGTTATAAGGGCTATTGGAAAATATCAGTCGTCCGGAGGTATGATTGATGAAACGAGCAGTGATGATGTAAATAAAAGATACACAGCCTTCGTTCATACATGGGACCTCTCTCGAATTTTCAATGCCTTGGACAGCGATGGCGATGGCATGGTTACTGCAGAGGACGTACAGGGGTTACTGGAAAAGGTTGGAATTCAAAATATATCTGATGATAGTATGAAAATAATGATGGGTTCTCTGGAGCATATGAGCTTTAAAGATTTCTGTGGACTTCTTGTCATTTTGTGTGGGGAAGCTGATAAGCATGCAGAGACTGAGGAGAAAGTGTTGTCGGAGGAATTGGTGGAAGCGTTCAGTGTTTTTGATAAGAATGGGGATGGGTTCATCAGCCCATGGGAACTTCAAAAGGTCCTGCTCAGCTTAGGACTCAAGGAGGGACAAGATTTGGGGAATTGTGAAATCATGATCTCAAGATTTGACAGAAATTCAGATGGTAGAATTGATTTTGAAGAATTTGAGAACATGATGACCATGACGGACAAATCTTTGCAAATGTGTTAA___TAAAAACTGTCTCTTGGATTTCTT

Fln Alignment:

Contig6739___MVSDVIIRNPAVSNVCAMPMYWSIIISMALSWVRKFYSFYNYYVYVWVSEMMKTMFPQLCNPKNPDVIRAIGKYQSSGGMIDETSSDDVNKRYTAFVHTWDLSRIFNALDSDGDGMVTAEDVQGLLEKVGIQNISDDSMKIMMGSLEHMSFKDFCGLLVILCGEADKHAETEEKVLSEELVEAFSVFDKNGDGFISPWELQKVLLSLGLKEGQDLGNCEIMISRFDRNSDGRIDFEEFENMMTMTDKSLQMC
D5A8C1______________MMSDLIIRNRAVSNVGAMSMSGSLIVSMALSWVQKFYSFYNFYIYVWVSQMMKTKFPNLCNRKDPDIIMANAEDPSSGCMIDETSSDVVNKRYTAFVYTWDLSRIFNALDSDGDGLVTAEDVQGLLEKLGIQNISDDNMKIMMGSLEHMSFDDFCRFLLDMWEEAREHAETEEKVLS-ELVEAFGVFDKNGDGFISPFELQQVLLSLGLKEGKDLESCEMMITRFDRNSDGRIDFEEFENMMTMTGKSLSMC

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
142		28		71	1.0
243	33		66		1.0
268	25		75		0.996473
284		75	25		0.996473
306		25		75	0.996473
310		25		75	0.996473
320			83	16	0.994512
321	66	33			1.0
331	33			66	0.997452
339		66	33		0.997452
361		75	25		0.996473
363		25	75		0.996473
364	75		25		0.996473
367	25			75	0.996473
368		25		75	0.996473
369	75	25			0.996473
370			25	75	0.996473
371	83			16	0.994512
372	83		16		0.994512
374			83	16	0.994512
376		83		16	0.994512
377		16		83	0.994512
379		16		83	0.994512
381		16	83		0.994512
382	16		83		0.994512
395	16		83		0.994512
432		11	88		0.923564
434	88	11			0.923564
469	77	22			0.999999
536	33		66		1.0
552	25		75		1.0
553		12		87	0.992554
580	50		50		1.0
594	75		25		1.0
621	43	56			1.0
623	81			18	1.0
626		11		88	0.999937
627			16	83	1.0
630		5		82	0.999919
634	12		87		0.999964
635	81	18			1.0
636		50		50	1.0
639		87	12		0.999964
640			12	81	0.999943
642		50	50		1.0
646		15		84	0.999986
648		15		84	0.999986
704	53		46		1.0
771	42	57			1.0
875	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain