SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene6718

Length: 2337 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene6718
AGGGTTATTACGGCATGATAAAACATCAAATTATCAATTGAAGCCCTCGTGACTTGGGAAGATATTCATGAAAAATTGGATAGCGATAAACAGTCAATTTGTCCAACGAAGACTTCCTAATGTTTCCATGCAGGCATTCCATTCACCTTCTCCCGTTTTTCCCATTCTAGAAATCAATTAAAAAGTTTTCAACATCAAGAATTTAAGCTTGGACAAATTCATTAAAGGTTCTGAGAAATATCCAATCCTTAGGAATCCGAAGCAGGGAGAATTATATTCTCTATAACAAACTTTCCAATGGAAAAGAAAAAAAATAATGCATAAACCGATTAACTAGCCGACCAACTTGTCATTTTGTAACAAGCACATGGTCACTTAAAAAATAAGTGTTTAAAGTTGGCCAACTTTCAAGTTTAATAAAATTATAGCCAAAACTATTTCCGCAAAATTTCAGTTATATTCTGCGCTAAAGCTTACATTGCCCTGTTATCAAAAAGACAATATCTAATCAACATCCTGAAGAGGTTGAGCAACATCCTCTGCTGTGAATTTGCCCTTCCCTTTCTCCGCAGCTCTGCCCTTTCCTTTTCTCTCCAAAAGATCTTTTCTATCCTTATCTAATTTCAACTTTGTCACAACCACCTTGGATGGGTGGACACCAACATTCACAGTTGTGCCGTTGACTTTCTCACGAGTAATACGCTCAACATGTATGACCCATTTCTTTCGATAAACTTGGACAACTTTGCCTTCTCTACCCTTAAATGTTCCTCGTACCACCTGAACTTCATCATCCTTTCTAATCGGAATCGAACGAACATTGTACTTGTTCCTCAAATCAGAGGACAGTGGTGCACTCATCAAAATACGTCGCACACTAGATGGGGCAGTGAAATGTGCCTTGCGGCTCTTCCTCCTGGAACTGCTGACTCTAGGATTGTACTTCATCCTGAATGGCAACTTTTTAGGCCTGCAACTGCCTCTTCGCCGCCTCGCCTTTCCTCTCCCTCCTCTCAGTCGGCGCCTGCGTTCCCAACAACGAAGGGGAGAAAGTAAGGAAGGAGCTCTCTCCGACAGCCGTTCCGGCCTTCCATCTCGATCTTCTCGAGAGACAATTGAAATCCAGGGTTTGTTCTTTCTTTTGGCAGAAGAGACGAATTGAACATCCAGGGTTTTCTTTGATTGATATATAACCACTGTATAGTTAGGCAGTCATGGGTTCAAACAAGGGGCAGGGTGGAATTCAGTTGTTACTGGCTGCAGAGCAGGAGGCACAACACATTGTTGCTTCTGCTAGAGCTGCAAAAATGGCTAGATTGAAACAAGCAAAAGACCAAGCTGAGAGGGAAATTGCTTCTTACCGGGCACAGAGGGAAACTGAATTTCGAAGGAAGGTCGCAGAGACCAGTGGTGATTCTGGATCCAATGTTAAGCGACTTGATGAAGAAACCAAAGCAAAGATTGAGCATTTGCAAAATGAGGCATCTAAAGTTTCTCCTGAAGTGGTTGCCATGCTTATGAAATATGTTACAACTGTGAGGAACTAATGCAGTTGTGCAATTGCTAGTGCTGGCAGTTGTGGTTTGCAGTCTTGGTAAGCAAATTTTCACATCTAGAATGGTCACTCTTTTAGGTTGAATTGGTTTCTTATGTCTAATTGGCTTTCTTTCAAAATAATGTAATTTGAAAACTTGAATGATTATCAATGGAATGTTATGTCTACATGATAATCAGACGAAATGAGAGAGCGTGTGTACCTACAGTCCAAGATGCAAATTTAATTTCATCTTATTTTGAATTTGTTAATTTTCTGGACTGAAATATTGTTTAATATTTGGGGGAAAATAGATTTGTTAATTCTCAGCATGTGAATTTTCAGGCATGGATATAGAATCTGTGGGTTGTTTTGGATGCTGTTTTCTACCGATGTGAATAGAGCCTTTGGAGGAGACTGATTTAAATTATTAGCATCTGATAAAATAATCAAATATATTAGCAAAAATTTGTGAATGTGACTTTTCAGGATTGGATATAATTTTTTTGGGTTGTTTGGAATCTGGATGCTGTATACCAGCATAAATAGAGAGATATTGGAGGAGACTGATTTAAGATTAGAAAAGCTGTGGTGTTTTGATTCTGGCCTGTACAAGAAAGTGTGTGAAAATCTTGAGTTTATTGTTGAACCTAATTTTTTTTACAACTTTCTATCATTCATAAATGGAATTGAATAATTTATTGATCCATTGTCGAAGAGAAGGAATTTGAGGTTTATCCTTTCAGAACTTTGAATTTTCTTATGGAACTTGTCAATGGGGATTTGGCATTACACGGTTCTGC

Ace file of the UniGene sp_v2.0_unigene6718 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L26-2 n=2 Tax=Arabidopsis RepID=RL262_ARATH	-	-	3.0e-37	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	60s ribosomal protein l26	-	-	0.0	98%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on acid anhydrides, Acting on acid anhydrides; catalyzing transmembrane movement of substances.	EC:3.6.3.-	-	0.0	98%

Source	GOs	Term	Type	Identity
Blast2go	proton transport	GO:0015992	Biological Process	98%
Blast2go	translation	GO:0006412	Biological Process	98%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	98%
Blast2go	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	GO:0016820	Molecular Function	98%
Blast2go	large ribosomal subunit	GO:0015934	Cellular Component	98%
Blast2go	vacuolar proton-transporting V-type ATPase complex	GO:0016471	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein L24/L26, conserved site	IPR005825	-	-
Sma3	Ribosomal protein L24, SH3-like	IPR014723	-	-
Sma3	Ribosomal protein L26/L24P, eukaryotic/archaeal	IPR005756	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNM3

Fln msg:

Fln protein: MGSNKGQGGIQLLLAAEQEAQHIVASARAAKMARLKQAKDQAEREIASYRAQRETEFRRKVAETSGDSGSNVKRLDEETKAKIEHLQNEASKVSPEVVAMLMKYVTTVRN*

Protein Length: 112

Fln nts: AGGGTTATTACGGCATGATAAAACATCAAATTATCAATTGAAGCCCTCGTGACTTGGGAAGATATTCATGAAAAATTGGATAGCGATAAACAGTCAATTTGTCCAACGAAGACTTCCTAATGTTTCCATGCAGGCATTCCATTCACCTTCTCCCGTTTTTCCCATTCTAGAAATCAATTAAAAAGTTTTCAACATCAAGAATTTAAGCTTGGACAAATTCATTAAAGGTTCTGAGAAATATCCAATCCTTAGGAATCCGAAGCAGGGAGAATTATATTCTCTATAACAAACTTTCCAATGGAAAAGAAAAAAAATAATGCATAAACCGATTAACTAGCCGACCAACTTGTCATTTTGTAACAAGCACATGGTCACTTAAAAAATAAGTGTTTAAAGTTGGCCAACTTTCAAGTTTAATAAAATTATAGCCAAAACTATTTCCGCAAAATTTCAGTTATATTCTGCGCTAAAGCTTACATTGCCCTGTTATCAAAAAGACAATATCTAATCAACATCCTGAAGAGGTTGAGCAACATCCTCTGCTGTGAATTTGCCCTTCCCTTTCTCCGCAGCTCTGCCCTTTCCTTTTCTCTCCAAAAGATCTTTTCTATCCTTATCTAATTTCAACTTTGTCACAACCACCTTGGATGGGTGGACACCAACATTCACAGTTGTGCCGTTGACTTTCTCACGAGTAATACGCTCAACATGTATGACCCATTTCTTTCGATAAACTTGGACAACTTTGCCTTCTCTACCCTTAAATGTTCCTCGTACCACCTGAACTTCATCATCCTTTCTAATCGGAATCGAACGAACATTGTACTTGTTCCTCAAATCAGAGGACAGTGGTGCACTCATCAAAATACGTCGCACACTAGATGGGGCAGTGAAATGTGCCTTGCGGCTCTTCCTCCTGGAACTGCTGACTCTAGGATTGTACTTCATCCTGAATGGCAACTTTTTAGGCCTGCAACTGCCTCTTCGCCGCCTCGCCTTTCCTCTCCCTCCTCTCAGTCGGCGCCTGCGTTCCCAACAACGAAGGGGAGAAAGTAAGGAAGGAGCTCTCTCCGACAGCCGTTCCGGCCTTCCATCTCGATCTTCTCGAGAGACAATTGAAATCCAGGGTTTGTTCTTTCTTTTGGCAGAAGAGACGAATTGAACATCCAGGGTTTTCTTTGATTGATATATAACCACTGTATAGTTAGGCAGTC_-_ATGGGTTCAAACAAGGGGCAGGGTGGAATTCAGTTGTTACTGGCTGCAGAGCAGGAGGCACAACACATTGTTGCTTCTGCTAGAGCTGCAAAAATGGCTAGATTGAAACAAGCAAAAGACCAAGCTGAGAGGGAAATTGCTTCTTACCGGGCACAGAGGGAAACTGAATTTCGAAGGAAGGTCGCAGAGACCAGTGGTGATTCTGGATCCAATGTTAAGCGACTTGATGAAGAAACCAAAGCAAAGATTGAGCATTTGCAAAATGAGGCATCTAAAGTTTCTCCTGAAGTGGTTGCCATGCTTATGAAATATGTTACAACTGTGAGGAACTAA___TGCAGTTGTGCAATTGCTAGTGCTGGCAGTTGTGGTTTGCAGTCTTGGTAAGCAAATTTTCACATCTAGAATGGTCACTCTTTTAGGTTGAATTGGTTTCTTATGTCTAATTGGCTTTCTTTCAAAATAATGTAATTTGAAAACTTGAATGATTATCAATGGAATGTTATGTCTACATGATAATCAGACGAAATGAGAGAGCGTGTGTACCTACAGTCCAAGATGCAAATTTAATTTCATCTTATTTTGAATTTGTTAATTTTCTGGACTGAAATATTGTTTAATATTTGGGGGAAAATAGATTTGTTAATTCTCAGCATGTGAATTTTCAGGCATGGATATAGAATCTGTGGGTTGTTTTGGATGCTGTTTTCTACCGATGTGAATAGAGCCTTTGGAGGAGACTGATTTAAATTATTAGCATCTGATAAAATAATCAAATATATTAGCAAAAATTTGTGAATGTGACTTTTCAGGATTGGATATAATTTTTTTGGGTTGTTTGGAATCTGGATGCTGTATACCAGCATAAATAGAGAGATATTGGAGGAGACTGATTTAAGATTAGAAAAGCTGTGGTGTTTTGATTCTGGCCTGTACAAGAAAGTGTGTGAAAATCTTGAGTTTATTGTTGAACCTAATTTTTTTTACAACTTTCTATCATTCATAAATGGAATTGAATAATTTATTGATCCATTGTCGAAGAGAAGGAATTTGAGGTTTATCCTTTCAGAACTTTGAATTTTCTTATGGAACTTGTCAATGGGGATTTGGCATTACACGGTTCTGC

Fln Alignment:

Contig6718___MGSNKGQGGIQLLLAAEQEAQHIVASARAAKMARLKQAKDQAEREIASYRAQRETEFRRKVAETSGDSGSNVKRLDEETKAKIEHLQNEASKVSPEVVAMLMKYVTTVRN
B8LNM3______________MDSNKGQGGIQLLLAAEQEAQHIVASARSAKMARLKQAKDEAEREIASYRAQRETEFRKKVAETSGDSGSNVKRLEEETKEKIEHLQNEASRVSPEVVAMLMKYVTTVRN

SNPs (tot: 89)

Position	A %	C %	G %	T %	Probability
566		14		85	0.993533
661	14	85			0.993533
668		16		83	0.994512
708		14		85	0.993533
709	85		14		0.993533
769	83			16	0.994512
783		85	14		0.993533
785		85		14	0.993533
786	85		14		0.993533
789	14			85	0.993533
793		14		85	0.993533
794	14			85	0.993533
797			14	85	0.993533
800	14	85			0.993533
801		14		85	0.993533
802		85	14		0.993533
831		85	14		0.993533
837		83	16		0.994512
838			16	83	0.994512
842		16	83		0.994512
1115	3			90	0.997952
1121		86		13	1.0
1235	11			88	0.999952
1242		33	66		1.0
1289	53	7	38		1.0
1311			10	90	0.90298
1312	11		88		0.923564
1313	11	88			0.923564
1314		11		88	0.923564
1315			11	88	0.923564
1316	88	11			0.923564
1317	11	88			0.923564
1318	88		11		0.923564
1319		88	11		0.923564
1320		14		85	0.993533
1321	71		14		0.984337
1322	85	14			0.993533
1323	85	14			0.993533
1324	85		14		0.993533
1327	25		50	25	0.995533
1328		75	25		0.996473
1329	25		75		0.996473
1330			25	75	0.996473
1331	25	75			0.996473
1334	75		25		0.996473
1335	75		25		0.996473
1336			75	25	0.996473
1337			75	25	0.996473
1340	75		25		0.996473
1347			75	25	0.996473
1349			75	25	0.996473
1351	25	25	50		0.995533
1354		33	66		0.997452
1355		33	66		0.997452
1357	33		66		1.0
1360			66	33	0.997452
1361	66			33	0.997452
1362		33	66		0.997452
1363		33	66		0.997452
1365	66	33			0.997452
1366	33		66		0.997452
1370		66		33	0.997452
1554		57		42	1.0
1556	42			57	1.0
1557	42	57			1.0
1560			66	33	1.0
1561	66	33			1.0
1562	33	66			1.0
1563		66	33		1.0
1564			33	66	1.0
1568		66		16	0.988813
1569	16			83	0.994512
1570		16	83		0.994512
1571		16	16	66	0.988813
1572	16	66	16		0.988813
1573	83		16		0.994512
1574		66	33		1.0
1575	16		16	66	0.988813
1576	33	66			1.0
1577	83	16			0.994512
1792	96		3		1.0
2020	3			96	0.99245
2021		3		96	0.993037
2024			95	4	0.994598
2028	3			88	0.998862
2029	7			92	0.999664
2040	44			55	1.0
2139	3		3	85	0.996721
2150	88	11			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain